FMO07689.5prime Sequence
971 bp (971 high quality bases) assembled on 2008-11-03
> FMO07689.5prime
CAGTCGACATGGATCGCTCCGCCTTCGCGTCCCTTGTCAGCCCGTACCGC
CGACGTCCGTGGATGACGGAGCACGGAGCGGCGGCTGCGGACAGCGGCCA
GGTGGGCCTTAAGGGCATCGTCGCCGGCGGTATTACGGGCGGCATCGAGA
TCTGCATCACCTATCCCACCGAGTATGTGAAGACACAACTGCAGCTGGAC
GAGAAGGGAGCGGCGAAGAAGTACAACGGCATCTTTGATTGCGTTAAGAA
GACGGTGGGAGAACGTGGATTCCTGGGTCTCTACCGAGGTCTCAGTGTGC
TCGTCTACGGCAGCATTCCTAAGTCAGCGGCGAGATTCGGTGCTTTTGAA
TTCCTGAAATCGAACGCCGTGGACTCCCGAGGACAACTGAGCAACTCCGG
AAAGTTGCTTTGCGGCTTAGGAGCTGGCGTATGTGAGGCCATCGTGGCAG
TGACCCCGATGGAGACCATCAAGGTGAAGTTCATCAACGATCAGCGCAGC
GGCAATCCCAAGTTCAGGGGATTCGCCCACGGCGTTGGCCAAATCATCAA
GTCGGAGGGCATCTCTGGTATCTACAAGGGCCTAACGCCCACCATTCTGA
AACAGGGCTCCAACCAGGCCATTCGCTTCTTCGTACTGGAGTCCCTTAAG
GATTTGTACAAGGGTGACGATCACACGAAGCCAGTGCCCAAGTTGGTGGT
TGGAGTGTTTGGAGCTATCGCCGGAGCAGCCTCTGTGTTCGGTAATACGC
CGCTGGATGTGGTCAAGACGAGGATGCAGGGTCTGGAAGCATCGAAATAC
AAGAACACTGCCCACTGTGCGGTGGAGATCTTGAAGAACGACGTCCCGCC
GCCTTCTACAAGGGCACCGTGCCAGATTAGGTCGTGTGTGCCTGGATGTG
GCCATCACTTTATGATCTACGACTCTTTCATGGATCTGTCACAAGTGTGG
GTGGCAAGCTTTCTAGACCAT
FMO07689.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:42:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fabp-RC | 1660 | CG6783-RC | 430..1388 | 1..953 | 4585 | 99 | Plus |
| sea-RE | 1444 | CG6782-RE | 214..1172 | 1..953 | 4585 | 99 | Plus |
| sea-RD | 1660 | CG6782-RD | 430..1388 | 1..953 | 4585 | 99 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:42:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11560185..11560794 | 939..333 | 2870 | 99.2 | Minus |
| 3R | 32079331 | 3R | 11560852..11561185 | 334..1 | 1640 | 99.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:42:29 has no hits.
FMO07689.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:21:12 Download gff for
FMO07689.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6782-RD | 425..1386 | 1..957 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:36:20 Download gff for
FMO07689.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sea-RC | 116..1077 | 1..957 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:26:27 Download gff for
FMO07689.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sea-RD | 430..1391 | 1..957 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:26:27 Download gff for
FMO07689.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11560175..11560792 | 335..947 | 98 | <- | Minus |
| 3R | 11560852..11561185 | 1..334 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:36:20 Download gff for
FMO07689.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7385897..7386514 | 335..947 | 98 | <- | Minus |
| arm_3R | 7386574..7386907 | 1..334 | 99 | | Minus |
