FMO07695.5prime Sequence
1180 bp (1027 high quality bases) assembled on 2008-11-03
> FMO07695.5prime
CAGTCGACATGTCGGACACAATCTCTTTCGAGTTGGGCTCAGCTGCCGAC
CGGCCCCCCAACAGGTTTCAAGTGAACCCGGTCAACGGCAACAGTCGTAA
GTCGCAGGGAGCGGATGGCCCAGGATCCGGATCAGGAGCGGGAGCTGGAG
CAGGAGCAGGAGCTGGGGAGGATGGGCCGCACGAGGTCTACCGCCGACTA
ACAAACGCCGAGGGCGAGCTGCTCGAGGACGACACATTCGATGCGACACA
AATGCTCAACCAACGACAGCCCAGGCAGCAGAGGCAATCAATCAAAAGCA
GTTTCCGCGACAAGGATAAACCGTCAAGGTTCAAGGATCTGCAAACGACG
ACCCGCTTCCAGGTGGATCCCCAAAATGAGGAGTCCGACGAGTCCAATGA
CTCGCAGGAGGAGCGCGAGCTGCTGGACAACGAGTACGACACAAAATATG
GTAAAAGTTTCCGGCATTTCACCAGAGAGGCGTTACCCCGCCTGGACAAC
TACCGCAACATGATGTCCATCCAGGCGGCCTACCGTCCAACGCTCGACGA
GCTGCATAACGCCACGCTGGTGGGCAAGAACACGCACAGCTTGACACGTA
ATCAGGACCCGGAGTCGGGCATCCTGAATGGGGTCCTGAAATTCGGTTGG
ATCAAAGGTGTGCTCGTCCGCTGCCTGCTGAACATCTGGGGCGTGATGCT
GTTCCTCCGGCTCAGCTGGGTGGTGGGTCAGGCGGGCGTCATCGAGGGAT
TCGTATTAATTCTGACAACGACTGCTGTCACGACCATCACGGCCTTGTCG
ATGTCGGCGATAAGCACTAATGGTGTCATCAAAGGGGGTGGCACATACTA
TATGATATCCCGGTCTCTGGGGCCGGAGTTTGGTGGATCCATCGGTTTGA
TATTCTCCCTGGCAAATGCGTGGCGTGTGCCATGTATGTGGTCGGCTTCT
GCGAGTCTATGTTGGCCATGATGACGACCTTTGGCTGGGAGATCATAGAT
GGTGGCGTCCAGGATGTGCGCATCATTGGTGCATTACATTACTGCTGCTC
CTCATCATTGTGTCGTCGCATGGGAGTGGAGGCCAAGCGGCCAAATTCGA
ACTGCCTCATCATCTGTGGTGGCCATTGGGAGACTTGTTTTGGGCAGCCT
TAATCCGGACGAGGCGCCGTACGCGTGCAA
FMO07695.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:34:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ncc69-RG | 4762 | CG4357-RG | 1180..2326 | 9..1152 | 5315 | 98.2 | Plus |
| Ncc69-RF | 4051 | CG4357-RF | 409..1555 | 9..1152 | 5315 | 98.2 | Plus |
| Ncc69-RE | 4044 | CG4357-RE | 354..1500 | 9..1152 | 5315 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:34:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 12379138..12379413 | 284..9 | 1380 | 100 | Minus |
| 3L | 28110227 | 3L | 12374285..12374548 | 840..577 | 1320 | 100 | Minus |
| 3L | 28110227 | 3L | 12373984..12374211 | 1062..837 | 1010 | 98.2 | Minus |
| 3L | 28110227 | 3L | 12376436..12376618 | 464..282 | 915 | 100 | Minus |
| 3L | 28110227 | 3L | 12376001..12376116 | 578..463 | 580 | 100 | Minus |
| 3R | 32079331 | 3R | 5493354..5493408 | 726..672 | 185 | 89.1 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:34:21 has no hits.
FMO07695.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:09:10 Download gff for
FMO07695.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ncc69-RB | 401..1558 | 1..1152 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:33:55 Download gff for
FMO07695.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ncc69-RE | 343..1500 | 1..1152 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:07:52 Download gff for
FMO07695.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ncc69-RE | 343..1500 | 1..1152 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:07:52 Download gff for
FMO07695.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 12373957..12374210 | 838..1087 | 96 | <- | Minus |
| 3L | 12374288..12374546 | 579..837 | 100 | <- | Minus |
| 3L | 12376001..12376115 | 464..578 | 100 | <- | Minus |
| 3L | 12376437..12376616 | 284..463 | 100 | <- | Minus |
| 3L | 12379139..12379424 | 1..283 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:33:55 Download gff for
FMO07695.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 12367057..12367310 | 838..1087 | 96 | <- | Minus |
| arm_3L | 12367388..12367646 | 579..837 | 100 | <- | Minus |
| arm_3L | 12369101..12369215 | 464..578 | 100 | <- | Minus |
| arm_3L | 12369537..12369716 | 284..463 | 100 | <- | Minus |
| arm_3L | 12372239..12372524 | 1..283 | 98 | | Minus |
