FMO07696.5prime Sequence
931 bp (296 high quality bases) assembled on 2008-11-03
> FMO07696.5prime
CATTTATACGAAGTTATCAGTCGACATGAGGCTACTCAAGTGTTCCGTGT
TTGTGTATCTGTTCCTGATCTTCGATGCCGGCCATGCCTTCAGCATCATT
GGCCTCAACAAACAGATGCTCTACGAGTACGAGGGCAATGTCCTGGTGGG
TGCAAAGCCCCAGGACGAGGGCCACCAGGCGCCACCCACCACCGGATGGA
TTGTGCGGGGCAAGCTGACGCTCCAGCGGCAAAGCGAGCTGGTCTTGGCT
GCGGCGCTGGTCATAGACGATGTAACGCTGAACAACTCCGGCGAGAAGTT
CCTGCAGAACAAGGAGATGTACCCGCCCTACAAGCCCTTCAAGATCGCTC
TCACCAAGGATGGCGCCATCTCACATGTGGTCTTCAAGGAAGGCGATCCC
ATATGGAGCATGAACTTCAAGCGGGCCATCGCATCGGTGCTGCAGTTCCA
GATGAAGTCCAGCGGGGCCTTCGTCGTGGATGAGCTGGGTATTCACGGCA
CTTGCCGCACGGAGTACTTTGTGTCCAACAGGACAAACTACATCTCCATC
CGCAAAACGCCGGAGGTCAAGACCTGCAAGCCGTACTCGGAGGCGGTTCA
CACTACACGCAGCAACGTGCCGCCCAATACGTGCGAATTCGATCACCAGA
AGAGTGTGATCATTGGCAATGAGGCCATCTACCGGATGTCTCTGCACAAC
GAAACGGGTTACTATCTGAGCATGGCCCATGCCAAGGCACACCCTGATCC
ACACGTTCGATCCACGGGAGATCACACTCATTACTCGGAGTTGCTGCTCA
TTTCCTTAACGAGACGCCCATCGACATCCCATCGAATATGAACCTCATGG
CAGCAGATCATCCACTGAGCTGCAGCGGCTGATTCCAACGATCCCACTGA
AGTCGTAGCCTTCAGCAGCAGGAAACGCTGA
FMO07696.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:03:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cv-d-RA | 4744 | CG31150-RA | 273..1195 | 25..931 | 4030 | 97 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:03:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15851226..15851690 | 931..483 | 1370 | 93.3 | Minus |
| 3R | 32079331 | 3R | 15851750..15851978 | 484..256 | 1145 | 100 | Minus |
| 3R | 32079331 | 3R | 15852728..15852927 | 256..57 | 1000 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:03:09 has no hits.
FMO07696.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:14:51 Download gff for
FMO07696.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31150-RA | 260..1192 | 11..930 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:24:16 Download gff for
FMO07696.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cv-d-RA | 260..1192 | 11..930 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:47:27 Download gff for
FMO07696.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cv-d-RA | 262..1194 | 11..930 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:47:27 Download gff for
FMO07696.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15851227..15851688 | 485..930 | 93 | <- | Minus |
| 3R | 15851750..15851977 | 257..484 | 100 | <- | Minus |
| 3R | 15852728..15852927 | 57..256 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:24:16 Download gff for
FMO07696.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11676949..11677410 | 485..930 | 93 | <- | Minus |
| arm_3R | 11677472..11677699 | 257..484 | 100 | <- | Minus |
| arm_3R | 11678450..11678649 | 57..256 | 100 | <- | Minus |
