FMO07705.5prime Sequence
712 bp (709 high quality bases) assembled on 2008-11-06
> FMO07705.5prime
CTTATACGAAGTTATCAGTCGACATGGATGACGATCAGCAGTTTTGTTTG
CGGTGGAACAACCACCAGAGCACACTGATCAGCGTGTTCGACACGTTGCT
GGAGAACGAGACTCTAGTCGATTGCACGCTAGCCGCCGAGGGTAAATTTC
TCAAGGCCCACAAGGTGGTGCTGTCAGCATGCAGTCCCTACTTTGCTACC
TTACTACAAGAACAGTACGACAAACATCCCATCTTTATACTCAAGGATGT
CAAGTACCAAGAGCTGCGCGCCATGATGGACTACATGTACCGCGGCGAGG
TCAATATCTCGCAGGATCAGCTGGCCGCTCTGCTCAAGGCCGCCGAATCG
CTTCAGATCAAGGGCCTTTCGGACAATCGCACTGGCGGCGGAGTAGCTCC
CAAGCCAGAGTCCTCCGGCCATCATCGCGGCGGTAAGCTGAGCGGTGCCT
ACACACTGGAGCAAACTAAGCGGGCTCGACTGGCCACCGGCGGAGCGATG
GATACGTCTGGCGATGTGTCCGGTTCGCGCGAGGGCTCCTCGAGTCCGTC
GCGTCGTCGCCGAAAATTCCGACGTCGCAGCATGGAGAATGATGCCCACG
ACAACTCAAACTCGTCCGTGTTACAAGCCGCCGCCTCGAATCAGTCAATC
CTCCAGCAGACAGGGGCCGGTTTGGCCGTCTCCGCTTTTGGTCACCACCC
CAGTTGTCCTGC
FMO07705.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:10:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| lola-RAA | 4623 | CG12052-RA | 607..1290 | 24..709 | 3350 | 99.4 | Plus |
| lola-RZ | 2707 | CG12052-RZ | 403..1086 | 24..709 | 3350 | 99.4 | Plus |
| lola-RB | 2974 | CG12052-RB | 397..1080 | 24..709 | 3350 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:10:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10533118..10533511 | 591..198 | 1955 | 99.7 | Minus |
| 2R | 25286936 | 2R | 10533576..10533749 | 197..24 | 855 | 99.4 | Minus |
| 2R | 25286936 | 2R | 10532787..10532895 | 700..591 | 500 | 99.1 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:10:45 has no hits.
FMO07705.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:10:28 Download gff for
FMO07705.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lola-RI | 396..1086 | 16..712 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:19:12 Download gff for
FMO07705.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lola-RB | 393..1083 | 16..712 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:52:29 Download gff for
FMO07705.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lola-RB | 393..1083 | 16..712 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:52:29 Download gff for
FMO07705.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 10532776..10532894 | 592..712 | 97 | <- | Minus |
| 2R | 10533118..10533511 | 198..591 | 99 | <- | Minus |
| 2R | 10533576..10533750 | 24..197 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:19:12 Download gff for
FMO07705.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 6420281..6420399 | 592..712 | 97 | <- | Minus |
| arm_2R | 6420623..6421016 | 198..591 | 99 | <- | Minus |
| arm_2R | 6421081..6421255 | 24..197 | 98 | <- | Minus |
