FMO07706.5prime Sequence
1144 bp (956 high quality bases) assembled on 2008-11-06
> FMO07706.5prime
CAGTCGACATGTTTCCTGGTGGAAACGGAAACGCCGATTTGGGCTACAAC
AAGCATGCCCACGTCCATGGACTTGGACAACATGGCCATGGGCACAACCA
TAATCACAATCAGTTCCTGGCGCAGCCCCCACCACCCCCCACACATTTTT
CACTGCCCTCCGGGGGCGGTCAGGGCATGGTGACGCCCATGGTAGCCGCC
GGCCTGCCGCTCGCCATGCAGGGTGGCGTTGGCATCGATTGGGCGCAGCT
CGCCCAGCAATGGATCCACATGCGGGACGCTACTCCGGTGCCCATGCCCC
TGGCCCCTCCGCCGCCCATCATCAGCAATTTGCGAGAATACCACCAGCAG
ACGCTAGCAATGCCGGTGCCCAGTGTGGTCAGGGCGGGATTTCCGCAACT
AGAGGAGCACGGCGAGGCGGATATGGACATGGACGATGAGAATGATCGGG
GACATAGCACTGAGACACCCCCACCGCCAGCACCTTTGGTTACGCAATCC
CAATGGCTGGCGGGCACCGAAGTGGCTGGTCAGATCCCAGACGCCTCCAA
CGGAGCGGCTGTCACGCTGGGCAAGCAGCCATGGACCGGGTGGCAAATGC
AGACCGACAAATCAGGCAATTCCACGGCGCATATACCATCTCTGCTGAAG
CTGAACGTGAGCAATCCCAATGAGCCGCACCAACAGCTGCAGTTGCAGTT
GCAAGCGCATCAGCAGCAGCAGCAGCAGCATGCTCCCCAACCAACGCATC
CACACCATCCACCAGCACATCAGCCGCATGCACATCCACACCACCTAACA
CCACATACTCACCTGCCGCCACAGCACACACAGCAGACGCATGCGGAAAG
CGGAAGTAGCGGGGCTAGCAGTGAGATCGATGCAACAACGGAAAATGTTG
CCAGCTTGGATAAGAAGAGGCCTTGAGAAAATGGAGCGGGAAAAGCAGCG
GCAACTAAAACCGCCAGCAATCCTCCATGACCACGCCAGATGTTGAGGTC
AACCATGTTAAGCAATTATCAAGCAAAACACTAAACCAACCTGGTAACCT
TTGAACATCACGAAGGTGGCTAGGGCAGCGAAAATCCATTGAACGTGCCT
GTGAGGCCCCGTAAAACTAAAGTGGCGCCAATAGGTATAGTAAT
FMO07706.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:01:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31211-RC | 2899 | CG31211-RC | 126..1260 | 9..1137 | 5090 | 97.3 | Plus |
| CG31211-RB | 2927 | CG31211-RB | 126..1260 | 9..1137 | 5090 | 97.3 | Plus |
| CG31211-RA | 2870 | CG31211-RA | 126..1260 | 9..1137 | 5090 | 97.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:01:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11949805..11950354 | 9..558 | 2750 | 100 | Plus |
| 3R | 32079331 | 3R | 11950426..11950784 | 558..914 | 1700 | 98.9 | Plus |
| 3R | 32079331 | 3R | 11950862..11951012 | 919..1069 | 510 | 92.1 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:01:05 has no hits.
FMO07706.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:10:27 Download gff for
FMO07706.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31211-RC | 117..1232 | 1..1112 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:30:12 Download gff for
FMO07706.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31211-RA | 117..1232 | 1..1112 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:44:56 Download gff for
FMO07706.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31211-RA | 117..1232 | 1..1112 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:44:56 Download gff for
FMO07706.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11949796..11950354 | 1..558 | 99 | -> | Plus |
| 3R | 11950427..11950784 | 559..914 | 99 | -> | Plus |
| 3R | 11950858..11951014 | 915..1072 | 91 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:30:12 Download gff for
FMO07706.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7776580..7776736 | 915..1072 | 91 | | Plus |
| arm_3R | 7775518..7776076 | 1..558 | 99 | -> | Plus |
| arm_3R | 7776149..7776506 | 559..914 | 99 | -> | Plus |
