FMO07707.5prime Sequence
808 bp (807 high quality bases) assembled on 2008-11-06
> FMO07707.5prime
CAGTCGACATGGCCACCAGCGGTATTGTCGAGTCATTTCCCACGGGCGCA
CTGGTGCCCAAGGCGGAGACGGGAGTCCTGAACTTTCTGCAGAAGTACCC
GGAGTACGATGGACGCGACGTCACCATAGCCATCTTCGATTCCGGCGTCG
ATCCCCGGGCAACGGGACTGGAGACGCTGTGCGATGGAAAGACCGTTAAA
GTAATAGAGCGGTACGACTGTTCCGGATGCGGCGACGTGGACATGAAGAA
GAAGGTGACGCCGGACGAGAACGGCAACATTAAGGGCCTGTCCGGAAACT
CGCTCAAGCTGAGTCCGGAGCTGATGGCTCTGAACACAGATCCGGAGAAG
GCGGTGCGGGTAGGCCTCAAGAGCTTCAGCGATTTGTTGCCCTCCAAGGT
GCGGAACATCATTGTGGCCCAGGCCAAGCTGAAGCACTGGGACAAGCCGC
ACAAGACGGCCACTGCAAACGCCAGTCGCAAGATTGTTGAATTTGAGTCA
CAAAATCCAGGAGAAGCCTCAAAACTGCCCTGGGACAAGAAGATATTGAA
AGAGAATCTAGACTTTGAGCTAGAGATGTTGAATAGCTACGAGAAGGTGT
ACGGCGACATTAAGACCTCCTACGATTGCATCCTTTTTCCCACGGCCGAC
GGATGGCTTACAATCGTCGACACCACGGAGCAGGGCGATCTGGATCAGGC
TCTGCGCATTGGCGAGTATTCCCGCACGCACGAGACCCGCAATGTGGACG
ACTTTTCTTTCATATCGGTAAACGTCCACGACGAGGGCAACGTACTGGAA
GTGGTCGG
FMO07707.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:56:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TppII-RE | 4350 | CG3991-RE | 114..913 | 9..808 | 3910 | 99.4 | Plus |
| TppII-RF | 4375 | CG3991-RF | 202..1001 | 9..808 | 3910 | 99.4 | Plus |
| TppII-RA | 4287 | CG3991-RA | 114..913 | 9..808 | 3910 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:56:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 13157495..13157834 | 511..172 | 1685 | 99.7 | Minus |
| 2R | 25286936 | 2R | 13157139..13157439 | 808..508 | 1430 | 98.3 | Minus |
| 2R | 25286936 | 2R | 13158020..13158184 | 173..9 | 825 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:56:46 has no hits.
FMO07707.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:10:25 Download gff for
FMO07707.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TppII-RA | 117..920 | 1..808 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:47:16 Download gff for
FMO07707.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TppII-RD | 464..1267 | 1..808 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:35:22 Download gff for
FMO07707.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TppII-RA | 110..913 | 1..808 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:35:22 Download gff for
FMO07707.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 13157139..13157436 | 511..808 | 98 | <- | Minus |
| 2R | 13157496..13157832 | 174..510 | 99 | <- | Minus |
| 2R | 13158020..13158188 | 1..173 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:47:16 Download gff for
FMO07707.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 9045001..9045337 | 174..510 | 99 | <- | Minus |
| arm_2R | 9044644..9044941 | 511..808 | 98 | <- | Minus |
| arm_2R | 9045525..9045693 | 1..173 | 97 | | Minus |
