FMO07708.5prime Sequence
940 bp (-71 high quality bases) assembled on 2008-11-06
> FMO07708.5prime
CAGTCGACATGTTCCCACTAACCAACCGCTCTTCGAGTGGCAATCGCACC
AACAACAATCCGAGCAACAACAACAACAACCAGACCACAAGCTTCATAAT
CGGAGGTACCACCAATATTAACAACAACAACAATCAGCTTGGTGGCACAA
ACAGCGCTAAGGATAAAGGAAATTTTGAAAATAATTGGAGCTGCAATAAT
ACAACCGGTCGTCGATCTGGCAGTGGAAATAGTTGCAGTTTTTTAGATCT
CCAGTCCATCCGACGACTCCTGGAGCACGATGCCAGTGGATCCGTTTGCC
CCTCCTGCCGCTTATCCTTCGACAAGGGCAAGAGACGGAAACTGATCGAC
ACCTGCTGCCACGAGCGGTGCTATTCCTGCATGTTCCGCAACGACCAGTG
CCTCATGTGCATGAACAGCTCGCTGAAAGATGTTGATGGCGCCAATGCTC
AGGGCTATGACACCGGAATCGGTGGCTCCACATCGACGATAGTGAGTCCT
CTTGGATCCCCGCAGCCGCAGCTCAGATCGCATGCGCAACGAAACGTAGC
GCTGGCGCGTTACATGCAGCAGCACCGCCAGGAGTCGCAGTCTCCAGATT
ACCACCCTTCGCTATGCGAGCAATGGCAAACTGCCCCCGGGCAGCGGCAC
TGTCTACCAATTGGCAATGGATTTTACCACCGGCACCACGCAAACTGTCA
CAGTGGATGTGCATCACCAGCTCGGCGGAGGAGGATGAGGTGCTGCCGCC
GCGGCAAGTGTTTGATGGCCAACGGCATCATTGGCCATATCGCATCACAG
CATGAGCCGCACTTCCATGCGGCAGCCTACAGCAATGAGTGCCGCACCTC
CGGCCTTCGCCCACCGCCGACGCGTGGCGGTTCTTAACACTAGAATCCGT
GCAGTGCCCTCACTGGAGAGTTGCGTGGATCGGATCCGCG
FMO07708.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:41:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| rols-RC | 5832 | CG32096-RC | 546..1480 | 8..933 | 3935 | 95.7 | Plus |
| rols-RA | 5505 | CG32096-RA | 522..1456 | 8..933 | 3935 | 95.7 | Plus |
| rols-RE | 5849 | CG32096-RE | 563..1497 | 8..933 | 3935 | 95.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:41:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 12055194..12055432 | 246..8 | 1180 | 99.6 | Minus |
| 3L | 28110227 | 3L | 12013054..12013413 | 918..565 | 920 | 91.2 | Minus |
| 3L | 28110227 | 3L | 12028696..12028880 | 429..245 | 880 | 98.4 | Minus |
| 3L | 28110227 | 3L | 12027022..12027163 | 569..428 | 680 | 98.6 | Minus |
Blast to na_te.dros performed 2014-11-28 21:41:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2315..2475 | 46..205 | 171 | 60.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2316..2432 | 16..133 | 146 | 59.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2394..2492 | 41..133 | 139 | 65 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2910..2989 | 53..132 | 121 | 61.3 | Plus |
| Tc1 | 1666 | Tc1 TC1 1666bp | 1439..1517 | 243..164 | 118 | 64.2 | Minus |
FMO07708.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:20:24 Download gff for
FMO07708.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rols-RA | 114..1053 | 1..933 | 95 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:36:16 Download gff for
FMO07708.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rols-RE | 558..1497 | 1..933 | 95 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:37:53 Download gff for
FMO07708.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rols-RE | 558..1497 | 1..933 | 95 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:37:53 Download gff for
FMO07708.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 12027022..12027161 | 430..569 | 98 | <- | Minus |
| 3L | 12028696..12028878 | 247..429 | 98 | <- | Minus |
| 3L | 12055194..12055437 | 1..246 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:36:16 Download gff for
FMO07708.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 12020122..12020261 | 430..569 | 98 | <- | Minus |
| arm_3L | 12021796..12021978 | 247..429 | 98 | <- | Minus |
| arm_3L | 12048294..12048537 | 1..246 | 98 | | Minus |
