FMO07713.5prime Sequence
1144 bp (1000 high quality bases) assembled on 2008-11-06
> FMO07713.5prime
CCGTCGACATGTTTTCGATGTGCAAGCAGACGCACTCCGCCACGGCGGTG
GAGTTTTCGATAGCATGCCGCTTCTTTAACAATCTGGATGAGAACCTGGT
GGTGGCGGGCGCCAATGTACTAAAGGTGTACCGGATAGCGCCCAACGTGG
AGGCGAGCCAGCGTCAAAAGCTGAATCCCAGCGAGATGCGTCTGGCGCCC
AAAATGCGACTGGAATGCCTAGCCACATATACGCTCTACGGCAATGTGAT
GTCGCTGCAGTGCGTCTCATTGGCGGGTGCCATGCGGGATGCGCTGTTGA
TTAGTTTCAAGGACGCGAAATTGTCCGTACTGCAGCACGATCCCGATACG
TTTGCGCTGAAAACTCTCTCACTTCACTATTTCGAGGAAGATGACATACG
TGGTGGTTGGACGGGTCGCTATTTTGTGCCCACAGTTCGCGTAGATCCCG
ATTCCAGGTGTGCCGTCATGTTGGTCTACGGCAAACGGCTGGTGGTACTG
CCCTTTCGCAAGGACAACAGCCTGGACGAGATCGAGCTAGCGGATGTGAA
GCCAATTAAAAAGGCTCCGACGGCAATGGTCAGCAGGACGCCTATTATGG
CATCGTACCTGATAGCACTGCGAGATCTTGATGAGAAGATCGACAATGTT
CTGGACATACAATTCCTGCACGGCTACTACGAACCCAACGCTGCTTATAC
TCTACGAACCGGTGCGAACCTGTCCGGGAAGAATAAAGGTTTACCCGATT
CAGAAGCCAATTGGGGGTTGTCTGGTAATGACAGTCAATGCTGTAATCTA
TCTCAATCAGAGTGTCCCTCCATATGGCGTCAGTTTAAACAGTTCAGCGG
ATAACAGCACCGCATTTCCACTGAAGCCACAAGATGGCGTTCGTATTAGT
TTGGATTGTGCTAACTTTGCATTTATTGATGTCGACAAGCTGGTAATCTC
GCTTCGCACTGGTAGATTTATACGTGCTTACGCTTTGCGTTGACTCAATG
AAAACGGTTAGGACCTTCCATTTCCACAAGCAGCCGCCAGTGTGGCTAAC
TAGTTGTATTCTGCGTTCTGGCACTCCGAATACATATTTTTTGGATCACG
TCTCGGATTTCTTATGGCTGCCTTTACAGAGGAAGACCAAGCCC
FMO07713.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:56:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cpsf160-RB | 4504 | CG10110-RB | 125..1254 | 9..1139 | 5340 | 98.5 | Plus |
| Cpsf160-RA | 4845 | CG10110-RA | 125..855 | 9..740 | 3635 | 99.9 | Plus |
| Cpsf160-RA | 4845 | CG10110-RA | 959..1359 | 739..1139 | 1715 | 96 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:56:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 14502634..14503364 | 740..9 | 3610 | 99.9 | Minus |
| 2R | 25286936 | 2R | 14502061..14502463 | 1139..737 | 1550 | 96.1 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:56:16 has no hits.
FMO07713.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:20:25 Download gff for
FMO07713.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cpsf-RB | 105..1245 | 1..1144 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:46:55 Download gff for
FMO07713.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpsf160-RB | 120..1260 | 1..1144 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:35:05 Download gff for
FMO07713.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpsf160-RB | 120..1260 | 1..1144 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:35:05 Download gff for
FMO07713.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 14485709..14485725 | 1108..1125 | 94 | <- | Minus |
| 2R | 14502094..14502461 | 739..1107 | 96 | <- | Minus |
| 2R | 14502636..14503369 | 1..738 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:46:55 Download gff for
FMO07713.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 10373214..10373230 | 1108..1125 | 94 | <- | Minus |
| arm_2R | 10389599..10389966 | 739..1107 | 96 | <- | Minus |
| arm_2R | 10390141..10390874 | 1..738 | 99 | | Minus |
