FMO07715.5prime Sequence
1146 bp (955 high quality bases) assembled on 2008-11-06
> FMO07715.5prime
CAGTCGACATGGGACGTCGAACGTATTTAAGCCGGTCCTCAACGATTTCC
TACCCCAGCAGAATCGAAGGATGGCTGGATGTCTGCGAAACCGAGGGAGA
ACTAACTCGCCTGATCAAGACGCTTCCCTGGGGTCCTTTATACTGCGTGC
TGCAACAGGACGATCAGACATTCACCGCCTACTGCAGCGAGGAGATTTCG
CTAGGCGATGTTTGCTACGAGGACATTCCAAGGGTTCGGTTGGACCGAGT
TCGTCGTCCTGCGAAGGCTTTGTGGGACGGACCGCCGACGTTGGTCGAGG
AAAACGAGGATTCAGATTCGTGTGTTGGGGGCAGCGGCGGCATGAGTGGC
ATCAACGACATCGTCCTGAATACGACGCTCTACAGTGAACTAGATACGTC
CTATGAGAAGGCGTGCCGCCGTGGATCAGCGCCCACCACGCCCATTTTGG
GCAGCAAACAGCACCAGACGGAGCACAATGCCACCTCGCGTTTCACCAAC
TTCTTTTCCAAGAAATCCAATCCTTTGAAGCGGACCAAGTCGGTGACCAA
GCTGGAGCGGACCAAGCGCGGATCCGGCGGACTGAGGGGCTCCCGCTCGC
ACGAGAGTCTGCTGTCCAGTCACGCCGTCATGTCCACCATAGATCTCTCG
TGCACTGGGGCGGTGGGCGTGGCGCCCGTGCATCAGTCGGTTCTGGGACG
TCGTCACTGTTTTCAGGTACGGGGGCGGGCCTCGTGGCGAGCGGTACTAC
TCATGCGGATCGCGCCAGGAGCGCGACCTTTTGATCTACTCGCTGCGCAA
GTCGATCGCTCCGAATGCAGAGCACACGCGTCGCACGGGACAACTCGCTG
AAGATGTTGGTGGTACGAGGCGAAAAATCTGCCGCCCAAGAACGTTACTT
TTGCGAACTGCATTTGGACAAGACGCTGTACGGCCGGACTTCGGTGAGCT
GCAGACTGAATCTGCCTGTTTTGGGGGGGAGCACTTCGATTTCCCCCGAC
ATACCCGAAAATAATGTGATCCACTGTTAACCTTTTTCGTGGAGGGGAAC
AAAAAAAAGAGCGGACAATACCAATTTGTGGGAATCGGGTGAGAATACCC
GTACACGAATGTCCCCCTCCAGATGGCCCTGCGAAACAGGGTATTC
FMO07715.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:35:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42684-RH | 6022 | CG42684-RH | 898..2016 | 9..1135 | 4940 | 96.8 | Plus |
CG42684-RB | 6323 | CG42270-RB | 898..2016 | 9..1135 | 4940 | 96.8 | Plus |
CG42684-RG | 6028 | CG42684-RG | 1116..2043 | 200..1135 | 3985 | 96.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:35:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 17746965..17747360 | 640..1041 | 1385 | 95.3 | Plus |
X | 23542271 | X | 17721422..17721615 | 200..393 | 970 | 100 | Plus |
X | 23542271 | X | 17746771..17746898 | 515..642 | 640 | 100 | Plus |
X | 23542271 | X | 17746569..17746691 | 392..514 | 615 | 100 | Plus |
X | 23542271 | X | 17720586..17720699 | 87..200 | 570 | 100 | Plus |
X | 23542271 | X | 17711041..17711119 | 9..87 | 395 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:35:18 has no hits.
FMO07715.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:20:27 Download gff for
FMO07715.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42270-RB | 250..1384 | 1..1146 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:05:18 Download gff for
FMO07715.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42684-RB | 892..2026 | 1..1146 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:19:06 Download gff for
FMO07715.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42684-RB | 892..2026 | 1..1146 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:19:06 Download gff for
FMO07715.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 17711035..17711119 | 1..87 | 95 | -> | Plus |
X | 17720587..17720699 | 88..200 | 100 | -> | Plus |
X | 17721423..17721615 | 201..393 | 100 | -> | Plus |
X | 17746571..17746691 | 394..514 | 100 | -> | Plus |
X | 17746771..17746898 | 515..642 | 100 | -> | Plus |
X | 17746968..17747462 | 643..1146 | 92 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:05:18 Download gff for
FMO07715.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 17605068..17605152 | 1..87 | 95 | -> | Plus |
arm_X | 17614620..17614732 | 88..200 | 100 | -> | Plus |
arm_X | 17615456..17615648 | 201..393 | 100 | -> | Plus |
arm_X | 17640604..17640724 | 394..514 | 100 | -> | Plus |
arm_X | 17640804..17640931 | 515..642 | 100 | -> | Plus |
arm_X | 17641001..17641495 | 643..1146 | 92 | | Plus |