Clone FMO07715 Report

Search the DGRC for FMO07715

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:77
Well:15
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG42684-RB
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO07715.5prime Sequence

1146 bp (955 high quality bases) assembled on 2008-11-06

> FMO07715.5prime
CAGTCGACATGGGACGTCGAACGTATTTAAGCCGGTCCTCAACGATTTCC
TACCCCAGCAGAATCGAAGGATGGCTGGATGTCTGCGAAACCGAGGGAGA
ACTAACTCGCCTGATCAAGACGCTTCCCTGGGGTCCTTTATACTGCGTGC
TGCAACAGGACGATCAGACATTCACCGCCTACTGCAGCGAGGAGATTTCG
CTAGGCGATGTTTGCTACGAGGACATTCCAAGGGTTCGGTTGGACCGAGT
TCGTCGTCCTGCGAAGGCTTTGTGGGACGGACCGCCGACGTTGGTCGAGG
AAAACGAGGATTCAGATTCGTGTGTTGGGGGCAGCGGCGGCATGAGTGGC
ATCAACGACATCGTCCTGAATACGACGCTCTACAGTGAACTAGATACGTC
CTATGAGAAGGCGTGCCGCCGTGGATCAGCGCCCACCACGCCCATTTTGG
GCAGCAAACAGCACCAGACGGAGCACAATGCCACCTCGCGTTTCACCAAC
TTCTTTTCCAAGAAATCCAATCCTTTGAAGCGGACCAAGTCGGTGACCAA
GCTGGAGCGGACCAAGCGCGGATCCGGCGGACTGAGGGGCTCCCGCTCGC
ACGAGAGTCTGCTGTCCAGTCACGCCGTCATGTCCACCATAGATCTCTCG
TGCACTGGGGCGGTGGGCGTGGCGCCCGTGCATCAGTCGGTTCTGGGACG
TCGTCACTGTTTTCAGGTACGGGGGCGGGCCTCGTGGCGAGCGGTACTAC
TCATGCGGATCGCGCCAGGAGCGCGACCTTTTGATCTACTCGCTGCGCAA
GTCGATCGCTCCGAATGCAGAGCACACGCGTCGCACGGGACAACTCGCTG
AAGATGTTGGTGGTACGAGGCGAAAAATCTGCCGCCCAAGAACGTTACTT
TTGCGAACTGCATTTGGACAAGACGCTGTACGGCCGGACTTCGGTGAGCT
GCAGACTGAATCTGCCTGTTTTGGGGGGGAGCACTTCGATTTCCCCCGAC
ATACCCGAAAATAATGTGATCCACTGTTAACCTTTTTCGTGGAGGGGAAC
AAAAAAAAGAGCGGACAATACCAATTTGTGGGAATCGGGTGAGAATACCC
GTACACGAATGTCCCCCTCCAGATGGCCCTGCGAAACAGGGTATTC

FMO07715.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:35:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG42684-RH 6022 CG42684-RH 898..2016 9..1135 4940 96.8 Plus
CG42684-RB 6323 CG42270-RB 898..2016 9..1135 4940 96.8 Plus
CG42684-RG 6028 CG42684-RG 1116..2043 200..1135 3985 96.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:35:17
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 17746965..17747360 640..1041 1385 95.3 Plus
X 23542271 X 17721422..17721615 200..393 970 100 Plus
X 23542271 X 17746771..17746898 515..642 640 100 Plus
X 23542271 X 17746569..17746691 392..514 615 100 Plus
X 23542271 X 17720586..17720699 87..200 570 100 Plus
X 23542271 X 17711041..17711119 9..87 395 100 Plus
Blast to na_te.dros performed on 2014-11-28 22:35:18 has no hits.

FMO07715.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:20:27 Download gff for FMO07715.5prime
Subject Subject Range Query Range Percent Splice Strand
CG42270-RB 250..1384 1..1146 96   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:05:18 Download gff for FMO07715.5prime
Subject Subject Range Query Range Percent Splice Strand
CG42684-RB 892..2026 1..1146 96   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:19:06 Download gff for FMO07715.5prime
Subject Subject Range Query Range Percent Splice Strand
CG42684-RB 892..2026 1..1146 96   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:19:06 Download gff for FMO07715.5prime
Subject Subject Range Query Range Percent Splice Strand
X 17711035..17711119 1..87 95 -> Plus
X 17720587..17720699 88..200 100 -> Plus
X 17721423..17721615 201..393 100 -> Plus
X 17746571..17746691 394..514 100 -> Plus
X 17746771..17746898 515..642 100 -> Plus
X 17746968..17747462 643..1146 92   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:05:18 Download gff for FMO07715.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 17605068..17605152 1..87 95 -> Plus
arm_X 17614620..17614732 88..200 100 -> Plus
arm_X 17615456..17615648 201..393 100 -> Plus
arm_X 17640604..17640724 394..514 100 -> Plus
arm_X 17640804..17640931 515..642 100 -> Plus
arm_X 17641001..17641495 643..1146 92   Plus