FMO07716.5prime Sequence
1140 bp (909 high quality bases) assembled on 2008-11-06
> FMO07716.5prime
CAGTCGACATGACGCAACCACTGCCCATCCGCTTTCAGGAGCATTTACAG
CTCACAAATGTCGGGATCAACGCCAATTCATTTTCATTCAGCACGCTCAC
GATGGAATCGGATAAGTTTATTTGCGTGCGGGAGAAGGTGAATGATACCG
CCCAAGTGGTCATCATTGACATGAACGATGCCACCAATCCCACGCGGCGT
CCCATCTCAGCGGATTCGGCTATCATGAATCCAGCTAGCAAGGTCATTGC
GCTCAAAGCGCAAAAGACGTTGCAGATCTTCAACATTGAGATGAAGTCGA
AGATGAAGGCGCATACCATGAACGAGGATGTGGTGTTCTGGAAGTGGATC
TCCCTCAATACGCTAGCTCTGGTCACAGAAACGAGTGTGTTCCATTGGTC
CATGGAGGGCGATTCGATGCCGCAAAAGATGTTTGACCGGCATTCATCGC
TGAACGGTTGTCAAATCATCAACTACCGCTGCAATGCCTCCCAGCAGTGG
CTACTCTTGGTCGGCATTTCGGCACTGCCAAGTCGCGTTGCCGGTGCCAT
GCAGTTGTATTCGGTGGAGCGTAAGGTGTCCCAGGCGATCGAGGGGCATG
CGGCCAGTTTTGCCACGTTTAAAATCGATGCCAACAAGGAGCCGACCACG
CTGTTCTGCTTTGCAGTTTCGTACGGCCACTGGGGGCAAGCTTCATATTA
TCGAAGTTGGTGCTCCGCCGAACGGCAATCAGCCGTTTGCCAAGAAGGCT
GTCGATGTCTTCTTTCCGCCGGAAGCACAAAATGATTTCCCTGTGGCTAT
GCAAGTCTCTGCCAAGAACGACACCATCTACTTGATAACCAGTATGGGAT
ACATACATCTGTATGAACATGGAGACGGCCACGTGCATATAACATGAATC
GTATATCGGCTCGATACGATCTTTGTTACCGCACGGCATGAAGCAAGTGG
TGGCATCATTGGCGTCCATCCGCAAGGGACAGGTCCTCCTGGTGACGTCG
ACGAGGACAAATCATTTCCCTTCATAAACCCGTTCGGCAAATCCCGAATT
TGGCCTTCGCATGGCCGAGCGCACAATTTGGCTGGGTGCCCAAGAATCTC
TTGTGCAAAGTTCACAAAGCCCTCTTTACAGCCGGCCAAT
FMO07716.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:34:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Chc-RG | 5788 | CG9012-RG | 466..1592 | 9..1138 | 4955 | 96.8 | Plus |
| Chc-RF | 5577 | CG9012-RF | 255..1381 | 9..1138 | 4955 | 96.8 | Plus |
| Chc-RE | 5683 | CG9012-RE | 361..1487 | 9..1138 | 4955 | 96.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:34:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15832428..15833255 | 1085..257 | 3325 | 95.8 | Minus |
| X | 23542271 | X | 15833492..15833703 | 258..47 | 1060 | 100 | Minus |
| X | 23542271 | X | 15834123..15834164 | 50..9 | 210 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:34:54 has no hits.
FMO07716.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:17:19 Download gff for
FMO07716.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Chc-RC | 388..1524 | 1..1140 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:05:09 Download gff for
FMO07716.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Chc-RE | 353..1489 | 1..1140 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:18:54 Download gff for
FMO07716.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Chc-RE | 353..1489 | 1..1140 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:18:54 Download gff for
FMO07716.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15832375..15833253 | 259..1140 | 95 | <- | Minus |
| X | 15833492..15833699 | 51..258 | 100 | <- | Minus |
| X | 15834123..15834171 | 1..50 | 92 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:05:09 Download gff for
FMO07716.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15726408..15727286 | 259..1140 | 95 | <- | Minus |
| arm_X | 15727525..15727732 | 51..258 | 100 | <- | Minus |
| arm_X | 15728156..15728204 | 1..50 | 92 | | Minus |
