FMO07718.5prime Sequence
1074 bp (835 high quality bases) assembled on 2008-11-06
> FMO07718.5prime
CAGTCGACATGCCGAAGATTTTCCTGATCAAAAATCGCCTGCATCAGCAG
CAACAGCGCTTGCTTGAATCGCAAAACTTGCTGCAGCACAAGAATCAGGA
TGATGAGCGCTTGGTGCCGCCCCTCAGTCCAAGTGGGAGTGGTAGCGGCC
CCTCGCCAACGCCCACATCCCAACCACCACCGGAACCGCAAGGTCAGGGG
CAACAGGTGCTCGGACAGGTGCCCGATTCAGATCAACAGCCACTGAGCCT
CACGCGCAAACGATTCCACCATCGTCGTCACTACTTCGGACAATCGCGCC
ACAGTCTCGATCATCTCAATCAAAATCAGAGCCCGAATCCAAATGCAAAT
GCAAATCCCAATCAAATACAAAATCCTGCGGAATTGGAAGTCGAATGCGC
CACTGGCCAAGTTCAAAATGAAAACTTTGCCGCCGAGTTGCTGCAGCGTT
TGACACCAAACACTGCCACCACTGCACAAAATAATATTGTTAACAATTTG
GTTAATAATAGCAGAGCCGCCACCTCCGTTTTAGCCACTAAAGACTGTAC
AATTGAAAATTCCCCAATTAGCATACCAGAAAATCAGCGAGCAGAGGACG
AGGAGGAGCAAGAAGACCAGGAAAAAGAGAAGCCCGCAGAGCGGGAGAGA
GAGAAGTCCGATGAGAGGACAGAACAGGTAGAAAAGGAGGAGCGGGTGGA
GCGCGAAGAGGAGGAGGACGACTAGGTGGATGTCGGCGTAGAGGCGCCAC
GCCCACTATTCTATAATACCGGCGTGGTCTTACCCAGCCCAACGCAAGGA
GTATCCCCAAGAGCCCAAGGACTTATCCCTATCATCGCCAAATCCTCGCC
AGCTTCACCGCATATCCACAGTGACTCCGAATTCTTATTCGGACTCTGAT
GGGGGCTGCAAGCTGATTGTAGGACGAGAAGCCACCATTTGCCAGGTGAT
CATACCATTGTCCCTGCGCTTGCGCAGCACATCGGCACCGGCGGATCACG
ACAAGTTCGTCGGCCTCCGCGAATCCCGGCTCGCTTGTTGCTGACTCGGT
GATCAACGGGCGCCGCATTCCAAT
FMO07718.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:42:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ovo-RE | 6763 | CG6824-RE | 858..1923 | 8..1071 | 4740 | 97.1 | Plus |
| ovo-RB | 6606 | CG6824-RB | 858..1923 | 8..1071 | 4740 | 97.1 | Plus |
| ovo-RD | 5948 | CG6824-RD | 78..731 | 420..1071 | 2680 | 95.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:42:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 5064452..5065029 | 420..998 | 2420 | 96.4 | Plus |
| X | 23542271 | X | 5049130..5049542 | 8..420 | 2065 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:42:50 has no hits.
FMO07718.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:20:27 Download gff for
FMO07718.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ovo-RB | 826..1823 | 1..998 | 97 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:36:31 Download gff for
FMO07718.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ovo-RB | 850..1847 | 1..998 | 97 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:26:36 Download gff for
FMO07718.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ovo-RB | 850..1847 | 1..998 | 97 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:26:36 Download gff for
FMO07718.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 5049122..5049542 | 1..420 | 99 | -> | Plus |
| X | 5064453..5065029 | 421..998 | 97 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:36:31 Download gff for
FMO07718.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 4943155..4943575 | 1..420 | 99 | -> | Plus |
| arm_X | 4958486..4959062 | 421..998 | 97 | == | Plus |
