FMO07719.5prime Sequence
1163 bp (1020 high quality bases) assembled on 2008-11-06
> FMO07719.5prime
CAGTCGACATGACAATTACGTACACAGGTGAAGTGGCCACTTGTCGCGGC
TTTGGCTGTTTTCTCAAATTGCTGCTCAGATGGCGAGGAAGCATTTACAA
ACTGGTTTGGCTAGATCTTCTGGCCTTCTTGACCATTTACTATGCGATCA
ACATGGTGTATCGCTTTGGCCTCAACCCCGCACAAAAAGAAACCTTTGAG
GCCATTGTTCAGTACTGTGATAGTTACAGAGAACTCATACCCCTGTCCTT
CGTGCTTGGTTTCTATGTATCGATTGTGATGACCCGTTGGTGGAATCAGT
ACACCTCCATTCCCTGGCCAGATCCCATCGCCGTGTTTGTCAGCTCGAAT
GTCCATGGCCAGGATGAGCGAGGACGCATGATGAGGCGAACAATAATGCG
ATATGTGTGCCTTTGCCTGACGATGGTCCTGGCGAATGTTTCGCCGAGGG
TGAAGAAGCGTTTCCCCGGCCTAAATAATCTGGTGGAAGCGGGTCTGCTA
AATGACAATGAAAAGACCATCATCGAGACCATGAACAAGGCCTTTCCCAG
ACCTTCGAAGCACTGGCTGCCCATCGTTTGGGCTGCCAGTATTATAACCA
GGGCCAGAAAGGAAGGTCGCATTCGTGATGATTTTGCTGTGAAGACCATC
ATCGATGAGCTAAATAAGTTTCGTGGTCAGTGTGGACTCCTCATCAGCTA
CGATACCATTAGTGTACCTCTGGTGTACACCCAAGTGGTGACCCTGGCGG
TGTATTCGTACTTCCTTACCTGCTGCATGGGTCAACAATGGACCGATGGC
AAGGTGGTGGGCAATACCACATACCTGAACAAGGTGGATCTATACTTTCC
TGTATTACAACGCTGCAGTTCTTCTTCTACATGGGTTGGCTCAAGGTGGC
CGAGTCGCTGATAATCAATTTGGCGAAGACGATGATGATTTTGAGGTCAA
CTGGATGGTGGATCCGCAATCTTCAGTGTCCTATCTGATCGTCGACGAAG
ATGCCACCATGACCATCGGAGCTTGTTTAAAGATCAGTACTGGGAACGAG
GTTTCCCCAACCGAGCTGCCTAACCAAATGCTGCCGAACGAATCCGGGAG
AAATCATCAAGAGCCGTCCACTGCAAGATCGAGTTCCAGAATGCCGCCAT
GTCCACTCGCACA
FMO07719.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:00:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Best1-RD | 2930 | CG6264-RD | 439..1584 | 9..1151 | 5185 | 97.6 | Plus |
| Best1-RC | 3074 | CG6264-RC | 439..1584 | 9..1151 | 5185 | 97.6 | Plus |
| Best1-RB | 3269 | CG6264-RB | 439..1584 | 9..1151 | 5185 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:00:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 10165017..10165775 | 947..191 | 3680 | 99.6 | Minus |
| 3R | 32079331 | 3R | 10166124..10166238 | 190..76 | 575 | 100 | Minus |
| 3R | 32079331 | 3R | 10167249..10167319 | 79..9 | 355 | 100 | Minus |
| 3R | 32079331 | 3R | 10164786..10164963 | 1124..944 | 310 | 86.9 | Minus |
| 3L | 28110227 | 3L | 15301956..15302059 | 667..564 | 220 | 80.8 | Minus |
| 3L | 28110227 | 3L | 15299952..15300000 | 866..914 | 185 | 91.8 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:00:57 has no hits.
FMO07719.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:17:16 Download gff for
FMO07719.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Best1-RB | 437..1575 | 9..1144 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:30:08 Download gff for
FMO07719.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Best1-RB | 439..1577 | 9..1144 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:44:53 Download gff for
FMO07719.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Best1-RB | 439..1577 | 9..1144 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:44:53 Download gff for
FMO07719.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 10165019..10165775 | 191..945 | 99 | <- | Minus |
| 3R | 10166124..10166234 | 80..190 | 100 | <- | Minus |
| 3R | 10167249..10167319 | 9..79 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:30:08 Download gff for
FMO07719.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5991846..5991956 | 80..190 | 100 | <- | Minus |
| arm_3R | 5992971..5993041 | 9..79 | 100 | | Minus |
| arm_3R | 5990741..5991497 | 191..945 | 99 | <- | Minus |
