FMO07720.5prime Sequence
1155 bp (1051 high quality bases) assembled on 2008-11-06
> FMO07720.5prime
CAGTCGACATGAACTCCGTAATATCAGCATTTAAAGGAAAAAAAAATAGC
AATCCATCCTGCAATTCTCCAATGGGATCGGCGAATGGCACTGCTCCGGT
GGAGGCAAAGCCAAACAATTGCTACCAGTACCTGCGCCACATACGCGAAA
TCGATACAAACAACAAGCTCCTTTCTCCCGTCGTGGTTGTTGCAGAGGAG
AGGCCAGTGAGCAAGGCTGGTTCGCCCTCGACAGTGGCGACCATGGCTAC
TGGAGTCGATGTGGTGGATCACTGCCTGCCCACAACGGTACGATTGTCCG
TTACCGAGGCGCTATCCGACTTGAACATGAACGGAAAAGCCGTCGAACCC
CCCGTCACCCCATGCACTTCGGTTGGCGACAATGCCAATCTGGAGGTGGC
TGAAACATGGGCTTGTCCACCGCCACAAGCGACGGATGACGAGGACATAT
CCGAGCACTCGACAGCCGCCTGCACCAGCACAAGTAGCTCCAGCGAGCAC
AGCAACAGCACCGTGGTGCACAGTCCAACTGTGGGGGAGAGCACCTGTGA
CTCCGTGTCCGTCTCGGTAAGCCATCCAAGTCCCAGCGTGAGTCAGAACA
ACACATCGTCCGCCACCGGCCGGATGAGTAGCCCCCACAGCCAGTCGTCG
CTCTCCATAGCCTGCGAGCCGCACTCGGCGTCGACCACCACGCTGTCGTC
GCTGGGATCAGACCTGGGCAATGGAAACGGAAGTACCGTACCCGCGTTTC
TAATGGCCGCCCCCGTCACGCTGCCAATTGGCGGCCAGATGCCCACGATA
AAGTGCCTCCCAGGAGCAAGCTCAGCGGCCAGCACGCCCAAGCACTCGCG
CTACTCTAAGCCTCGTCTCAGCCTGAGCCGCGTGTTTAATCACTCTATGC
CCTCCGTGCCCGGCCGACCAAATCTCAGTTTAGCGCCAGCTGGAGTTCCG
GAAGTGTGATCCGCCGAACGTTTTTCCACGCACCAAGAACCCTAGCTTGG
ATTTAGAATCCATGGGCATACTTCTTCCGCCTGTCTCGCAGTGACCAATA
TCCATCATCCAACCCAGCACCACCGCAATCGCAGCCTCGACAGGCTTGCC
ACGCAATTCGGAAGTCGAAGTCACCGTATGCTGAAGGAACCCGTTCGTCA
CGTCA
FMO07720.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:40:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fwd-RD | 6109 | CG7004-RD | 952..2075 | 9..1121 | 5165 | 98 | Plus |
| fwd-RA | 7175 | CG7004-RA | 1185..2308 | 9..1121 | 5165 | 98 | Plus |
| fwd-RB | 5586 | CG7004-RB | 429..1552 | 9..1121 | 5165 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:40:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 313047..314027 | 986..9 | 4725 | 99.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:40:16 has no hits.
FMO07720.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:17:14 Download gff for
FMO07720.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fwd-RA | 1173..2295 | 1..1112 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:07:03 Download gff for
FMO07720.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fwd-RB | 421..1543 | 1..1112 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:22:03 Download gff for
FMO07720.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fwd-RB | 421..1543 | 1..1112 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:22:03 Download gff for
FMO07720.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 313024..314033 | 1..1007 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:07:03 Download gff for
FMO07720.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 313024..314033 | 1..1007 | 98 | | Minus |
