FMO07721.5prime Sequence
1099 bp (869 high quality bases) assembled on 2008-11-06
> FMO07721.5prime
CAGTCGACATGCGTCTCTTCAAAACGCGCAAATCCACGGATACCTACAGC
ACACTAGCCGCGCAGCAACAGCAACAGCAGCAGCAGCAACAACAACATCA
AGCGGAAGGCAGCAACATTTCCCACAGCAGCAACAGCAGCAGCAACAAGA
GTCACACACCGGCAACATGCAGCAACAGACTGAACAAGAGCATTGTGAGC
AGCACCAGCATATCGTCATCGCTGCCTGATCTGCATGACAAGTCGCCCGT
CATGATCCTCAGCTGCACCACCCTGGCCAGCAATGGAGCCACCGCCACGG
CAGCGGTCACAGCAACAGCCACCGGCACAGCAGCAACATCTGGCGGCTCG
CTGCAGCAGCAACAACAGCAGCATCTGCAACACCAGCAGCTGCAGCAGCC
GTTACGCACGGCCACGCCCACGTGTCTGCTGAGTGGCCGTCAGACGCCAT
CGGCCATATCGGTGATGTCGCTCCAAGAGGCCACCAGTCTGCACCGCCAG
CAACAGCAGCCACACCAGCCACCCACCATCTACGTGCCGGTGCCTACGAA
ACTTGGCAACAATGTCAACACTGGCAACAGCTCGGCCACTCTGCTGCTCA
GCTATGGCAGCACCAGCAGCATCGCCAAACCTGCAACAGCAGCAGCAGCA
GCATGCCGCCCAGTACCAGCAGTATGTTGCACAGCGGCTGCACGCCGCTT
TCAGCAGTTGTTTTGTACGAGAAGGGGTCGAATGCCCAGCGGTGGGGGCG
AGCAGCAACAAAAGCAGTCTATCCCTGACCCCAAATGGTCACTTGCCCGA
CTACCAGTTGGTGACAGCGATGCCAGTTGTTGTCCTGGACGATGAACACA
AATCCAATTCATTGCCGGCCACTGAAGCGAGTCCGCAACAGCACAGCATC
AGCACATGAACGGCAGCAGCAACAGCACCAGCCTTTGACGTCAGCAACAG
CACTCGCATCCGGGAACTCCACCTTTCTTTGTCAGCAACCACGAGAATTG
TTTCACCCTGGGCATGCGTCATGATTTGCAATCTGGATTTGCTGAAGCGG
ATTGACTCGCCGCGCGCACAAATCGCATTCCGATTGTAGGGACTTGTTC
FMO07721.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:41:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| a-RD | 3897 | CG6741-RD | 327..1404 | 9..1085 | 4685 | 96.4 | Plus |
| a-RA | 4847 | CG6741-RA | 551..1628 | 9..1085 | 4685 | 96.4 | Plus |
| a-RC | 4665 | CG6741-RC | 369..1446 | 9..1085 | 4685 | 96.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:41:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 22162920..22163696 | 9..789 | 3675 | 99.2 | Plus |
| 2R | 25286936 | 2R | 22164776..22164941 | 787..952 | 595 | 95.8 | Plus |
| 2L | 23513712 | 2L | 14062188..14062238 | 8..58 | 195 | 92.2 | Plus |
Blast to na_te.dros performed 2014-11-28 21:41:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2186..2469 | 123..405 | 209 | 59.3 | Plus |
| TART-C | 11124 | TART-C TARTC 11124bp | 7055..7135 | 309..392 | 124 | 65.9 | Plus |
FMO07721.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:17:13 Download gff for
FMO07721.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| a-RA | 522..1467 | 1..952 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:36:08 Download gff for
FMO07721.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| a-RC | 363..1308 | 1..952 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:37:49 Download gff for
FMO07721.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| a-RC | 363..1308 | 1..952 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:37:49 Download gff for
FMO07721.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 22162914..22163694 | 1..787 | 98 | -> | Plus |
| 2R | 22164777..22164941 | 788..952 | 95 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:36:08 Download gff for
FMO07721.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 18050419..18051199 | 1..787 | 98 | -> | Plus |
| arm_2R | 18052282..18052446 | 788..952 | 95 | == | Plus |
