FMO07723.5prime Sequence
1138 bp (920 high quality bases) assembled on 2008-11-06
> FMO07723.5prime
CAGTCGACATGGCCTGGTCCCGTCTCCTGGCCTGGTGGCGCCTCTGCTTG
GGCCTGCTCTCCGTTCTGGTCTGTTTGGCACCGTGCGTCAATCTGCAGCC
AGCCGAGAACATCAACTACAATCTCGTTCATTCGTGGGCCGACAAATTGG
GCATGGAGCTGTTTCATCTGGGCGATTTCATCACCAGGCGCAAGGAGGTG
CAAGAGAGTTTCAAGGATGCAAAGGTCGTTTCGCGCAACGGCGCTTCTAT
TGTCGATTCGATGGCCAAGGAAATCGAAATGATGATGGACCTAAAAGTCA
GTGCAGTGAGGCGAATCATGGACACGGCTGAGAACACGGCGTTGTCGCAT
CAGAACGACATGGCGGACAAGATGTTCTCCTATTATAGTGCCAAGGAGAT
GCTGGAGCCCGGCGATCCAGTCCCGCCCATTCCCACACCGGCTCCCGACA
TGGACAAGGATATAGGCGAGCCGCTGATCTACGTCCAGCCGAAGGTGGTG
GTGTTGGAACCGCGTCCGGAATTCCACAATACTCCGGTCAACTTTAGCGT
CAGTTCGGTCCACGTGCCAGTCAATGTGTTCGATCGAGCACCGGATGTGA
TAAAAGCAATTCAGTGGTCGGAGTATTTGGATCAGATATTCCGTGACAAT
TACAAAAACGATCCGACATTGTCGTGGCAATTCTTTGGCAGTTCGACTGG
CTTTATGCGTCAATTCCCTGCATCGAAGTGGCGAAAGGACGTACCGGTCG
ATCTATACGATTGTCGACTTACGCTCCTGGTACATGGAGGCGGCGACGAG
ACCGAAGGATATTGTTATCCTGATGGGAGGGATCCGGTTCATTGTGGGGA
CAGAGGCTAGATATCGCAAAGCATGTTGTCAATACGATACTCGATACATT
AGGTACAAATGACTTTTGTGATCTCTTCCCCTTTGATTAGGAAGTGAGCC
CAGTCGTCCCATGTTTCGAAGACCCCTGATCAGCCCATCCTGGGCAACAT
ACGCGAACGGAAAGAAGGGATTGAACTGGTTAAACCCAAATCCATCGCCA
ATATACCGCTGCATTGAACAAGGGCATTTCAGCTAATGGAAGACCAAGTT
GGAGTTCGCGGCGGGGGCGCAATGCAAATTCAGGCGAT
FMO07723.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:42:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| stj-RD | 4866 | CG12295-RD | 809..1936 | 8..1138 | 4985 | 96.7 | Plus |
| stj-RC | 5825 | CG12295-RC | 418..1545 | 8..1138 | 4985 | 96.7 | Plus |
| stj-RB | 6057 | CG12295-RB | 809..1936 | 8..1138 | 4985 | 96.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:42:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 13809273..13809657 | 587..973 | 1625 | 95.9 | Plus |
| 2R | 25286936 | 2R | 13807898..13808175 | 311..588 | 1390 | 100 | Plus |
| 2R | 25286936 | 2R | 13806602..13806718 | 8..124 | 585 | 100 | Plus |
| 2R | 25286936 | 2R | 13807726..13807836 | 201..311 | 540 | 99.1 | Plus |
| 2R | 25286936 | 2R | 13806797..13806878 | 125..206 | 410 | 100 | Plus |
| 2R | 25286936 | 2R | 13809920..13810023 | 990..1093 | 305 | 90.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:42:53 has no hits.
FMO07723.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:17:26 Download gff for
FMO07723.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| stj-RB | 1122..2214 | 1..1093 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:36:34 Download gff for
FMO07723.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| stj-RB | 802..1894 | 1..1093 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:26:37 Download gff for
FMO07723.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| stj-RB | 802..1894 | 1..1093 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:26:37 Download gff for
FMO07723.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 13807899..13808175 | 312..588 | 100 | -> | Plus |
| 2R | 13806595..13806718 | 1..124 | 97 | -> | Plus |
| 2R | 13806797..13806878 | 125..206 | 100 | -> | Plus |
| 2R | 13807732..13807836 | 207..311 | 100 | -> | Plus |
| 2R | 13809275..13809669 | 589..982 | 95 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:36:34 Download gff for
FMO07723.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 9694100..9694223 | 1..124 | 97 | -> | Plus |
| arm_2R | 9694302..9694383 | 125..206 | 100 | -> | Plus |
| arm_2R | 9695237..9695341 | 207..311 | 100 | -> | Plus |
| arm_2R | 9695404..9695680 | 312..588 | 100 | -> | Plus |
| arm_2R | 9696780..9697174 | 589..982 | 95 | -> | Plus |
