FMO07726.5prime Sequence
1157 bp (988 high quality bases) assembled on 2008-11-06
> FMO07726.5prime
CAGTCGACATGGGCGTTCCCAAGTTCTTTCGCTACATCAGCGAGCGATAT
CCGTGCCTCAGCGAATTGGCGCGGGAGCACTGCATACCCGAGTTCGACAA
TCTGTACTTGGACATGAACGGCATTGTCCACAACTGCTCGCATCCGGACG
ACAACAACATACACTTTCACCTGGAGGAGGAGCAGATATTCCAGGAAATC
TTCAACTACGTAGACAAGCTGTTCTACCTGATCAAGCCGCAGCGCCTCTT
CTTCCTTTCAGTTGACGGGGTGGCTCCACGGGCCAAGATGAACCAGCAGC
GCAGCCGGCGATTCCGGACGGCGCGCGAGGCGGAGCAGCAGGAGGCCAAG
GCGGCCCAGCGAGGCGAGTTGCGAGAGCACGAGCGCTTCGACAGCAACTG
CATTACGCCGGGCACCGAATTCATGGTGCGTCTGCAGGAGGGACTGCGCG
CCTTTCTCAAAACGAAGATTTCGACGGATCCGCTGTGGCAGCGTTGCACC
GTAATCCTAAGTGGCCAGGAGGCGCCCGGCGAGGGCGAGCACAAGATCAT
GGACTACATTCGGTACATGAAGACGCAGCCGGACTATGATCCCAATACAC
GACACTGCCTTTACGGCCTGGACGCCGATCTGATCATTCTGGGCCTCTGC
ACCCACGAGCTGCACTTCGTGGTGCTGCGCGAGGAGGTCAAGTTCGGGCG
CAACGTCAAGCGCACCTCGGTGGAGGAGACGCGCTTCTTCCTGCTGCACC
TGGGTCTGCTGCGCGAGTACCTCGAGCTGGAGTTCGACGCCCTGAGAACA
GACGAGCACAAATTGGACATTGCGCAGCTTATCGACGACTGGGTGCTGAT
GGGGCTTTTTGGTCGGCAACGACTTCATTCCCCACCTGCCCGTGCCTGCA
CATTTCATCAAATGCCTGCCGCTGCTCTACCGCACCTTACATCGGCATTT
ACCCGACCCTCGGGCGGCAACATCAACGAAGAACGGGCAACCACAACCTG
CCGCCGCTTGCTGATTTTCTTATCGGCCCTCACCGAAGGTTGGAGCCTGT
ATCACCTTCAAGGACCCCGCCGACTGAACTTTGAAGTTCATTGAACACAA
TTTCGAAGGCGTTTCTAATTGGGACGTCCGGCAGAGATCACGAGGTTCTT
AAAACCC
FMO07726.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:34:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pcm-RB | 5384 | CG3291-RB | 195..1254 | 5..1074 | 4950 | 98.2 | Plus |
| pcm-RA | 5260 | CG3291-RA | 195..1254 | 5..1074 | 4950 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:34:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 19490733..19491679 | 1036..84 | 4310 | 98.7 | Minus |
| X | 23542271 | X | 19491739..19491817 | 83..5 | 395 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:34:29 has no hits.
FMO07726.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:17:08 Download gff for
FMO07726.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pcm-RA | 132..1194 | 1..1074 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:05:00 Download gff for
FMO07726.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pcm-RA | 132..1194 | 1..1074 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:18:38 Download gff for
FMO07726.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pcm-RA | 192..1254 | 1..1074 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:18:38 Download gff for
FMO07726.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 19490699..19491679 | 84..1074 | 98 | <- | Minus |
| X | 19491739..19491820 | 1..83 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:05:00 Download gff for
FMO07726.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 19384732..19385712 | 84..1074 | 98 | <- | Minus |
| arm_X | 19385772..19385853 | 1..83 | 98 | | Minus |
