Clone FMO07727 Report

Search the DGRC for FMO07727

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:77
Well:27
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG17376-RB
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO07727.5prime Sequence

227 bp (227 high quality bases) assembled on 2008-11-06

> FMO07727.5prime
CAGTCGACATGTGCAACGGATGTGGATGCTGTGGACCCTGTAATGAAACA
CCCTGCTGTGGCCCCCACAGTCCGCCATGCGGAGCCCCGTCTCCCATCCC
GTGCTCTCCTGCTCCGGGCATGTGCTGTCCCCCTCTGCCCGAGGGCGGCA
TTCCCGATCCCCGTGTCTGGAACTACTACAACACGCCCCCAACTTATCCA
TGTGGCTTCGCAAGCTTTCTAGACCAT

FMO07727.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:56:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG17376-RB 518 CG17376-RB 158..360 7..209 1015 100 Plus
CG17376-RC 784 CG17376-RC 98..294 7..203 985 100 Plus
CG17377-RD 907 CG17377-RD 487..641 54..208 430 85.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:56:04
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6800487..6800683 203..7 985 100 Minus
2L 23513712 2L 6802059..6802187 182..54 420 88.4 Minus
Blast to na_te.dros performed on 2014-11-28 20:56:04 has no hits.

FMO07727.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:17:07 Download gff for FMO07727.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17376-RB 92..309 1..220 96   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:46:45 Download gff for FMO07727.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17376-RB 92..309 1..220 96   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:34:56 Download gff for FMO07727.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17376-RB 152..369 1..220 96   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:34:56 Download gff for FMO07727.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 6800479..6800687 1..211 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:46:45 Download gff for FMO07727.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 6800479..6800687 1..211 96   Minus