FMO07729.5prime Sequence
785 bp (707 high quality bases) assembled on 2008-11-06
> FMO07729.5prime
ATACGAAGTTATCAGTCGACATGTTGGCCCACTCCGCGCATGTAATGACG
TTGGCCAACAGCATCATAGGCGTCGGCATCTTGGCCATGCCGTTCTGCTT
CCAGAAGTGCGGCATCCTGTTATCCATCGTTCTTCTTGTGCTAAGCAATG
GAATAACCCGGGTTTGCTGCCACTATCTTATTAAAACCTCGCTGCTGACA
CGTAGGAGGAGCTTCGAGATGCTCGGTCTCCATGCTTTCGGTACTTCCGG
CAAGCTGCTGGTGGAGCTGTGCATCATTGGCTACCTGATTGGAACGTGCA
TCACGTATTTTGTGGTCGTGGGCGATCTGGGTCCGCAGATAATCGCCAAG
ATTTTCGCGCTGGACGTGGCAGATCACCTGCATCTGCGGAGTCTGGTCAT
GGTCGTAGTCACTGTGGTGTGCATAGTGCCCCTCGGCATGCTCCGCAATG
TGGACAGCTTGTCCGCCGTTTGCACCGCGTCCATAGGTTTCTATGTCTGC
CTAATTCTCAAGATCGTGTTGGAGGCCCAGCCACTCATTACGGCCAACGA
CTGGACGGAAAAGGTGCTCTACTGGGAACCGGCGGGCGTACTCCAAATGC
CTACCCATCTTCAGCATGGCTCTCTCCTGCCAAATGCAACTATTTGAGGT
CTTTGAGAGCATTAACAACCAGAGTCTCGACAAATTAAACGGCATCGTCC
GCAATGCCACTTGGATTTTGTACTTTTGTTTCATATCTGTTGGTTTTTCG
GATATGTGGCGTTTTGTACGCACACCCTTTTTCTG
FMO07729.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:55:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30394-RB | 2959 | CG30394-RB | 343..1102 | 21..780 | 3680 | 99.2 | Plus |
| CG30394-RA | 3055 | CG30394-RA | 439..1198 | 21..780 | 3680 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:55:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21322506..21322882 | 397..21 | 1885 | 100 | Minus |
| 2R | 25286936 | 2R | 21322217..21322457 | 636..395 | 1145 | 99.2 | Minus |
| 2R | 25286936 | 2R | 21322012..21322157 | 780..636 | 570 | 97.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:55:57 has no hits.
FMO07729.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:17:04 Download gff for
FMO07729.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30394-RB | 574..1335 | 21..785 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:46:41 Download gff for
FMO07729.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30394-RA | 439..1200 | 21..785 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:34:51 Download gff for
FMO07729.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30394-RA | 439..1200 | 21..785 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:34:51 Download gff for
FMO07729.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21322009..21322157 | 636..785 | 96 | <- | Minus |
| 2R | 21322218..21322456 | 396..635 | 99 | <- | Minus |
| 2R | 21322508..21322882 | 21..395 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:46:41 Download gff for
FMO07729.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17209514..17209662 | 636..785 | 96 | <- | Minus |
| arm_2R | 17209723..17209961 | 396..635 | 99 | <- | Minus |
| arm_2R | 17210013..17210387 | 21..395 | 100 | | Minus |
