FMO07732.5prime Sequence
686 bp (686 high quality bases) assembled on 2008-11-06
> FMO07732.5prime
CAGTCGACATGCGTGCCCTCATTATTCTAAGCATTGTGGCAGCGGCAAGT
GCCGGTAGCTTGTCCGGATATAATTACGGACAAGGTGCGACAACCAGTAT
TGGGGGCAGTGGTGTATCCCCAGTCCCTGCACTGGCGGGACCAGTTAGCT
ATAGTGCCGCTCCCCAGGCGTCAGTTCACAAGGAGTTCTACAGCTTCTAT
GCCAACGATGACGACTTCGAGGATAAGGCTGCTCTCCAGAGGGCTCTTGC
CTCGGTCAAGAAGAACATTCGCGTCATCTTCATCAAGTCGCCGGAGAACC
GTGGCTACGAGAATGCCGTTTTGGCCCTGGCTAAACAGGCGGCCCAGCAG
CAGACTGCCATATATGTGCTGCACAAACAGACTGATATCAACGAGCTGGC
CCAGAAATTCAATGCCGTGCGCCAGAATGCCAACAAGAAGCCCGAGGTGC
ACTTCGTCAAGTACAGGACACCTGAGGATGCTGCCAATGCCCAGCGGGCA
ATCCAATCGCAGTACGATCAACTCGGCGGCTCCAGCCAGTCCATCAACGG
TGGCGTGGCTAATGCCATCAACTTTGCATCCCAGGGAGCTGCTCCAGCAC
GCGTTACTCCTCAACAGGTGCCCCAGAGCAACTACCTACCCGCCAACATC
CTGAGTCGCCTGCGTCACGCAAGCTTTCTAGACCAT
FMO07732.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:59:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TwdlP-RA | 757 | CG14240-RA | 41..700 | 9..668 | 3300 | 100 | Plus |
| TwdlO-RA | 807 | CG6452-RA | 309..620 | 270..581 | 645 | 80.4 | Plus |
| TwdlN-RA | 1088 | CG5476-RA | 594..902 | 273..581 | 480 | 77.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:59:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 26620665..26621324 | 668..9 | 3300 | 100 | Minus |
| 3R | 32079331 | 3R | 26626119..26626430 | 581..270 | 645 | 80.4 | Minus |
| 3R | 32079331 | 3R | 26632462..26632770 | 273..581 | 480 | 77 | Plus |
| 3R | 32079331 | 3R | 26624784..26625073 | 559..270 | 460 | 77.2 | Minus |
| 3R | 32079331 | 3R | 26619721..26620004 | 270..553 | 445 | 77.1 | Plus |
| 3R | 32079331 | 3R | 26622700..26622963 | 533..270 | 435 | 77.7 | Minus |
| 3R | 32079331 | 3R | 26628090..26628362 | 542..270 | 405 | 76.6 | Minus |
| 3R | 32079331 | 3R | 26630310..26630560 | 270..520 | 385 | 76.9 | Plus |
| 3R | 32079331 | 3R | 26634193..26634450 | 276..533 | 270 | 73.6 | Plus |
| 3R | 32079331 | 3R | 26640630..26640705 | 430..505 | 185 | 82.9 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:59:25 has no hits.
FMO07732.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:17:00 Download gff for
FMO07732.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TwdlP-RA | 28..696 | 1..668 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:29:11 Download gff for
FMO07732.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TwdlP-RA | 32..700 | 1..668 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:44:06 Download gff for
FMO07732.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TwdlP-RA | 32..700 | 1..668 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:44:06 Download gff for
FMO07732.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 26620665..26621330 | 1..668 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:29:11 Download gff for
FMO07732.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 22446387..22447052 | 1..668 | 99 | | Minus |
