FMO07733.5prime Sequence
1148 bp (889 high quality bases) assembled on 2008-11-06
> FMO07733.5prime
CAGTCGACATGTACGGTGGAGACGAATACGCAACCAACTCGGATTACTAC
GATGACTACGCTCATACCGGAGACCCGCAACTGGACATGGAGTACGAGAG
GAACTACTACGCCGCCCGGATGCCGGACAACGTCAAGTACTTCCTCATAA
ACTTCTGCCAGGCGATCAAAGAGGGCAACTTGTACGACATCCAAAACATG
TACGAGAACACGTTCCCGCAGATCAGCGACCACCACTTCGACAAGACTGC
TTGGCCCGAGGAGCAGGAGGTGGCTGCTATTGTAGACAACGACAAGGTCT
TCCTGATCTTATACAAGGAGTTGTACTATCGCCACATCCACGCCCGCATC
CCCGGTGGTCCCAAGTTGGAGCAGAGGATCAACTCGTTCTTCAACTACTG
CGACTTCTTCAACCTGATCATCTCGGCCCAGAACCCAGTGATGCTGGAGC
TGCCCGACATCTGGCTGTGGGAGTTGGTGGATGAGTTCGTGTATCAGTTC
CAGAACTTCGCGCAGTATCGCGCCCGCCTTACGGAGAAATCGCAGGATGA
GATCCAGCAGCTGTGCGTGAACCACAGCAACGAGTGGAGCATTCTCTGCA
TCCTCAACGTTCTGCATTCCCTTGTGGACATCTCGAACATCAAGAAGCAG
CTGGAGGCCATCTCTCAAGGTGTTGATCCCCAAACCGTGGCCGGTGACTT
CGGCAAACTGTCCTTCTACAAGATGCTGGGATACTTCTCCCTTGTCGGAC
TGCTGCGCGTTCATTCGCTGCTGGGTGACTACTACCAGGCCATCAAGGTG
CTGGGAGCCCATTGAGATCCACAGAATTCCGCCTATTCGCACATCCCCGC
CCTGCCAAATCTCGACGTTCGTACTACGTGGGGCTTCGCCTAATGATGAT
GCGCCGCTACGCTGATGCCATCCGCACTTTTCTGATATCCTCCTGTACAT
TCAGCGTCCAGCAGCTGTACAGGCCGCGTTCATACCAAACGATCAAATCA
CAGGAGGCCGAAGCATATGTACATTTTTTGGTATCTGTCCTTGTACTCAT
CCCAGGGCATCAACTGTCCATCCAGCGGGGGCTTCGGGAAAGGACCTACC
CGCACGCCTGGTTTAAAATGGCGGGCGGGGGGATTTGGAAGGTCTTCA
FMO07733.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:21:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5642-RA | 1834 | CG5642-RA | 110..1228 | 9..1120 | 4805 | 96.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:21:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 12144772..12145251 | 520..41 | 2400 | 100 | Minus |
| 3L | 28110227 | 3L | 12144236..12144718 | 1000..520 | 1910 | 97.1 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:21:50 has no hits.
FMO07733.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:16:58 Download gff for
FMO07733.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5642-RA | 120..1137 | 1..1015 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:29:48 Download gff for
FMO07733.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5642-RA | 102..1119 | 1..1015 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:07:37 Download gff for
FMO07733.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5642-RA | 102..1119 | 1..1015 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:07:37 Download gff for
FMO07733.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 12144248..12144717 | 521..989 | 97 | <- | Minus |
| 3L | 12144772..12145250 | 42..520 | 100 | <- | Minus |
| 3L | 12145956..12145996 | 1..41 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:29:48 Download gff for
FMO07733.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 12137348..12137817 | 521..989 | 97 | <- | Minus |
| arm_3L | 12137872..12138350 | 42..520 | 100 | <- | Minus |
| arm_3L | 12139056..12139096 | 1..41 | 95 | | Minus |
