FMO07734.5prime Sequence
876 bp (-60 high quality bases) assembled on 2008-11-06
> FMO07734.5prime
TACCAGACAGATGGCTGAAGTACAAACCGATTGGAGATCGTGTTCCTGGC
ACTCGTTTCATATCCTTTAAGGTGCCGCTGAATCAGCATGTCAACGCCAA
AGTGAAGGAGAATCTTCGGCTGGCGCCCGAATCCCTTCTGCAGATCGTAC
CCGATATGGGTCTCATCATCGATTTGACCAACACGAATCGATACTACCAC
CCAAGTGCCATAACCAACCACGATGTGCTCCACCAGAAGCTGATGATCCC
CGGAAAACAGACACCCTCGCATAAGCTAGCCCAAAGATTCTGTGCTTTCG
TGACTGACTTCCTTGAAAGGAACGCGGATAATGACAAACTAATTGGCGTC
CATTGCACACATGGAGTAAATCGAACTGGATACCTGATCTGCTACTTCAT
GATCTCCGTAATGAACATGTCCCCTGAGGAGGCGATACAAACCTTTTCTT
TGGCCCGCGGCCATGAAATCGAACGCGACAATTACCTGAGCTCTCTAAAG
ACACTCCCGAATCGGGAGACCGTAACGAAGCTTGCTGCCACAGAGAGGAG
ATCATCCACAATAGATAATTGGCGTCAGCCAATTGATTACCAAAGCGAAA
GAGATTTGCATCAGAAAAAATCCACAGACTGTCAAATTCTTGAAAACGAA
ATCTTATCATGAACACGACGACTGTCGAAATCGCGACCGCCTGGAACCAA
CATCCTTATGCCCTAACCCATAAACCCGCATCCAGTCGAAGAACAAAGAA
GGATTCAAGTTCCGATCTAGAGATGGGATATCAGCAGGGCTCGAACCAAC
ATCCTTTTTTCCAGTACCATAGACCGCATTGAAGTCGAAGAGCAATTTAG
GATTCAAGTACCGATTAGGAGGAGGC
FMO07734.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:36:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13197-RB | 3613 | CG13197-RB | 119..996 | 1..876 | 3845 | 96.7 | Plus |
| CG13197-RA | 1274 | CG13197-RA | 119..996 | 1..876 | 3845 | 96.7 | Plus |
| CG13197-RB | 3613 | CG13197-RB | 912..1012 | 694..794 | 190 | 82.7 | Plus |
| CG13197-RA | 1274 | CG13197-RA | 912..1012 | 694..794 | 190 | 82.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:36:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11691965..11692167 | 84..286 | 1015 | 100 | Plus |
| 2R | 25286936 | 2R | 11694655..11694832 | 442..619 | 890 | 100 | Plus |
| 2R | 25286936 | 2R | 11694926..11695147 | 634..857 | 580 | 88.9 | Plus |
| 2R | 25286936 | 2R | 11694473..11694581 | 333..441 | 545 | 100 | Plus |
| 2R | 25286936 | 2R | 11691497..11691575 | 8..86 | 380 | 98.7 | Plus |
| 2R | 25286936 | 2R | 11692497..11692545 | 285..333 | 245 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:36:08 has no hits.
FMO07734.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:17:11 Download gff for
FMO07734.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13197-RA | 108..985 | 1..876 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:48:23 Download gff for
FMO07734.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13197-RA | 119..996 | 1..876 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:06:56 Download gff for
FMO07734.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13197-RA | 119..996 | 1..876 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:06:56 Download gff for
FMO07734.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11691488..11691575 | 1..86 | 94 | -> | Plus |
| 2R | 11691968..11692167 | 87..286 | 100 | -> | Plus |
| 2R | 11692499..11692545 | 287..333 | 100 | -> | Plus |
| 2R | 11694474..11694581 | 334..441 | 100 | -> | Plus |
| 2R | 11694655..11694840 | 442..626 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:48:23 Download gff for
FMO07734.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7578993..7579080 | 1..86 | 94 | -> | Plus |
| arm_2R | 7579473..7579672 | 87..286 | 100 | -> | Plus |
| arm_2R | 7580004..7580050 | 287..333 | 100 | -> | Plus |
| arm_2R | 7581979..7582086 | 334..441 | 100 | -> | Plus |
| arm_2R | 7582160..7582345 | 442..626 | 98 | -> | Plus |
