FMO07742.5prime Sequence
887 bp (887 high quality bases) assembled on 2008-11-06
> FMO07742.5prime
CAGTCGACATGAAAGCTATCGTTTGTGTTTTTGTGACCCTTTTGGCCTGC
GTAGCGGCCTACGATGTGGAGCTGCTCACCGAGGAGCAATGGGACCAGCT
GGTGGCGCGTAATCCCGCCAAGCCCGATACTCAGGGTCTGATCTTGAACG
GATCGGTGAAGAAGGCCATCAATGGACTGCTGAACCAAATGCCTTGTGGT
TGGCCCCAATATGGAATTCCACCACTGGATCCCTACACCAATGCTGATCT
CCGCATCCACTTGGCCGAGTCGGTTGTCGATACCCTGCTGCAGTTCCTGC
GCTTCCGTTTCGATGGCCTGGAAGGCATGGAGATCAAGAAGATGAAGGTC
AGCTACACCTTTAGCAAGAAGGTCAAGTTCCACTTCAACTTCCCAGAGCT
GAAGGCCAGTGCCCACTATTTGGACACCAACACCTTTGTGAATCTGCTGA
AGGAACTGGGATTGTCGGTGCGCTACGAGAGCTCGGGCCCATTGTCCTTC
AGCCTGCAGAATCTGTCGATTCAGGGCGAGTTCAAGTACAAGATGCCCTT
CATCTTTGGCTCCATCAAGATCTACAAGTTCAGTTGCGCCGTCGGCTTGG
GCGGTGTATCCTCGAACATTGGCGGTGTAATGGGAAATGGAAGGATCAAT
GAGTTCATCAACGACATGCTCGACAAGGAGATCCCGGCCTTCATCAATGG
CAACCAGGAACAGATCAGCGCCAAGATCGAGGAGATCTTTGTGCCGCTGG
CCAATGCGCATCTCACGGGTCACAAGATCTGGTATCTCTTTAGCTTGCTG
TCCGCCACCACTGGCAGTTGCAATCCCACTCCCGCTCCCTGGTTGGCCAT
TGAGTCCAGGAAGCTAGACGCAAGCTTTCTAGACCAT
FMO07742.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:48:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7916-RA | 923 | CG7916-RA | 27..887 | 9..869 | 4305 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:48:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 13847175..13847763 | 281..869 | 2945 | 100 | Plus |
| 2L | 23513712 | 2L | 13846954..13847119 | 115..280 | 830 | 100 | Plus |
| 2L | 23513712 | 2L | 13846778..13846883 | 9..114 | 530 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:48:06 has no hits.
FMO07742.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:16:47 Download gff for
FMO07742.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7916-RA | 22..886 | 9..874 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:09:36 Download gff for
FMO07742.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7916-RA | 27..891 | 9..874 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:26:25 Download gff for
FMO07742.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7916-RA | 27..891 | 9..874 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:26:25 Download gff for
FMO07742.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 13846778..13846883 | 9..114 | 100 | -> | Plus |
| 2L | 13846954..13847119 | 115..280 | 100 | -> | Plus |
| 2L | 13847175..13847767 | 281..874 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:09:36 Download gff for
FMO07742.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 13846778..13846883 | 9..114 | 100 | -> | Plus |
| arm_2L | 13846954..13847119 | 115..280 | 100 | -> | Plus |
| arm_2L | 13847175..13847767 | 281..874 | 99 | -> | Plus |
