FMO07745.5prime Sequence
1105 bp (953 high quality bases) assembled on 2008-11-06
> FMO07745.5prime
CAGTCGACATGGGCGGTGGTGAAGTGAAGGTCGCTACCGTCGACGTCGAG
GGCGGGGACAATATGGCCACCTTGCCGGTGTCCCGCTCGCATACCGCCGG
CAGCACCGACAGCGCCGAGAAGAACAACGCCGCCAACAAGGAGATGGAAC
TCAAGAACGTCATGCCGCAGCCGCTGCAGAGGACATCGCTGTTCATCGTG
ACCAGTCTGGTGTACGCGATCCTTCTGATCGTCGTGTGCATTGCATACGT
TATCAGCGATGTAACCACCCACCGACTGCCGGTTTTGTACTACGAGACAT
TCTTCACATATCTATACGGCGTCAGCATACTCTTCCTTCTCTACGTCTTC
TGTTTCCTGCTGCAGGAGAGCTCTTGCTGCAATGGCGGCAATGGTGGCAG
CAAACCGAAACCCCAGCCCAAGGAGAAGAAGTCGAAGAAAGCCAAAAATG
CCGATCCGGCCGATTCGAAGGATGCGAAGGGCTCTAAGGACTCTGGCAAG
GCAGCCAAGGGCGCCGCATATCAGGAAGCACCCGTGGACGCCGAGGTGGC
CGTCACTCCAAAGAATGTGCGCAAGCGCAAGACAACCCATAGTGATCTGA
CGCACGGCAGCTTTTTCCTGCGAGTGGGAGCCATTGCTTTCGGTTTGGGC
GCCATGATCTATATTGGCCTGGAGTTTGGATCGTTCTTTGAGATACCCTT
CGATTCGCCGTGTCATCACATCCTGATCGGCGTAAATCCGCTGCTCCAGA
TGATCTTCACCTTCATGCAGATGTACTTTATATTCATGAATGCCCGGCTG
AACATCCATCGCTTCAAGGTGATCGCTCGCTTTGGCCTGATGCATGTGGT
GCCCACCACATTTGCGTATGGATTCGCACCCTGGTTAAGGAATCGCTGCT
GAGATCACGATCTATCATCAGAAGAACAAGCAGAGGCCGCGCCTCGTCAT
AGCCACTCGATTCTTAGCCGCCTTGCGGATGCGGGCACGGTGCTGGCACT
CATGCGGACCTACAGCGAATTCGAGGTGCTTGACGCGAGGATTTTCTGCC
AAGGTATGTGACAAAACTAACATGTGCTATCAAGCTGTGCCATACTGATC
AATGT
FMO07745.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:47:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42492-RA | 4210 | CG42492-RA | 245..1339 | 9..1087 | 4805 | 97 | Plus |
| CG42492-RE | 6757 | CG42492-RE | 938..1881 | 181..1087 | 3740 | 94.4 | Plus |
| CG42492-RC | 4253 | CG42492-RC | 991..1934 | 181..1087 | 3740 | 94.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:47:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 5634241..5634427 | 366..180 | 935 | 100 | Minus |
| X | 23542271 | X | 5636221..5636394 | 182..9 | 855 | 99.4 | Minus |
| X | 23542271 | X | 5633106..5633272 | 797..631 | 820 | 99.4 | Minus |
| X | 23542271 | X | 5633870..5634029 | 525..366 | 800 | 100 | Minus |
| X | 23542271 | X | 5633354..5633468 | 636..522 | 575 | 100 | Minus |
| X | 23542271 | X | 5631220..5631496 | 1060..797 | 560 | 90.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:47:38 has no hits.
FMO07745.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:16:45 Download gff for
FMO07745.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42492-RA | 241..1300 | 9..1054 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:09:29 Download gff for
FMO07745.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42492-RA | 245..1304 | 9..1054 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:26:12 Download gff for
FMO07745.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42492-RA | 245..1304 | 9..1054 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:26:12 Download gff for
FMO07745.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 5631225..5631495 | 798..1054 | 91 | <- | Minus |
| X | 5633106..5633266 | 637..797 | 100 | <- | Minus |
| X | 5633354..5633465 | 525..636 | 100 | <- | Minus |
| X | 5633871..5634028 | 367..524 | 100 | <- | Minus |
| X | 5634241..5634425 | 182..366 | 100 | <- | Minus |
| X | 5636222..5636394 | 9..181 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:09:29 Download gff for
FMO07745.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 5527904..5528061 | 367..524 | 100 | <- | Minus |
| arm_X | 5525258..5525528 | 798..1054 | 91 | <- | Minus |
| arm_X | 5527139..5527299 | 637..797 | 100 | <- | Minus |
| arm_X | 5527387..5527498 | 525..636 | 100 | <- | Minus |
| arm_X | 5528274..5528458 | 182..366 | 100 | <- | Minus |
| arm_X | 5530255..5530427 | 9..181 | 99 | | Minus |
