FMO07748.5prime Sequence
1154 bp (821 high quality bases) assembled on 2008-11-06
> FMO07748.5prime
CAGTCGACATGTTTTATAAACTATGTGCTTTTATGTGTTTCTTGATAGTT
GGAGGGCATGTCACCACCACAATGGCCAGTGACAGCATATCGGGTTATAT
ACGAAAATGCTGTATAAATGGACTTCGACATGCTCGTACGACCGCCTCTT
GCAAAAAAATCGACATAGCCCCAACAATAATCCCGCAGCTCTGGCTTGGA
CTTTGTCATTCTACACTTGAAGTCTGCTGTTCTCGAGAACTGGACCATCA
AGATTGCGAGCTAGGTCGACTGGCTGCTTTAGACGGTACTCGCTGTGACG
GAGAAGGAAATGTAACATCTAGCTCCTATGCGACATGTTGTCGTTCTTGT
CAAATCGGATTAGCAGTTAAAGCGAGTAAAGCCAATTGCAAAGATCCATT
ATTTTCATTTATTTTCTTAATTGAATCATACCGAGCGTGCTGTTACGGAT
CTGCTGACTTTAAAGACCAGCCCGGTATCGACGAAATCGATAAGGCTAAT
TCTATTACTGATGAAGGTGAATTGCCGTTTGTTTCTGAAGAGGATATGAA
TGTAACTATTGTTCTTACCGGCGATGATGACATATGTGGAAAAATTGAAA
ACCTTTGCGCTCACTTATGCGAAAACACTTTCGACGCATACCAATGTAAG
TGCCACCCCGGGTTTTATGTTAGATAATAACAACGTAACATGCTCTCCCG
ATGAAAACCCAAATATGTCCCCAGCGGTTACAATTTAGATAAACTGGATA
ACAAATGCATTGACTTTGATGAATGCCGGGAAAATCTTCATGACTGCAAT
CATCCCATAATTGCCATAATACGAATGGCGGATACCACTGCTTAATGTGA
AAGAAAAAGAGTGTCCACAGGATTCATTATTGACCATGATTACCATGCAT
GATAACATTATTACAAAGCAAAGATCGTAAATGGCGTAAATTTCATCTTG
TGATAAATGATTCAGCTTGATAAACGGACCTGTTCGAAATTGACAAGGGC
TCCAATAAATCATTAAACACTTGTCAGGTCATATAATCAGGAATGTGTAA
ACACACTGTGGGAAGGTTATCCGGCATTTGCCGTGCGGAAATAATTGGAA
TGCCTACCTAAATAAGGGCGGTGGATAAAAAATGGAAGGGTGCATAACAA
AACT
FMO07748.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:21:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31999-RC | 3639 | CG31999-RC | 790..1902 | 9..1116 | 4560 | 95.2 | Plus |
| CG31999-RA | 2972 | CG31999-RA | 123..1235 | 9..1116 | 4560 | 95.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:21:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 4 | 1348131 | 4 | 223945..224440 | 576..81 | 2480 | 100 | Minus |
| 4 | 1348131 | 4 | 223562..223887 | 901..576 | 1180 | 94.8 | Minus |
| 4 | 1348131 | 4 | 225762..225834 | 81..9 | 365 | 100 | Minus |
| 4 | 1348131 | 4 | 222858..223000 | 1055..918 | 215 | 83.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:21:42 has no hits.
FMO07748.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:16:53 Download gff for
FMO07748.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31999-RA | 117..1192 | 5..1076 | 95 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:29:44 Download gff for
FMO07748.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31999-RA | 119..1194 | 5..1076 | 95 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:07:33 Download gff for
FMO07748.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31999-RA | 119..1194 | 5..1076 | 95 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:07:33 Download gff for
FMO07748.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 4 | 223557..223886 | 577..906 | 94 | <- | Minus |
| 4 | 223945..224439 | 82..576 | 100 | <- | Minus |
| 4 | 225762..225838 | 5..81 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:29:44 Download gff for
FMO07748.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_4 | 244183..244512 | 577..906 | 94 | <- | Minus |
| arm_4 | 244571..245065 | 82..576 | 100 | <- | Minus |
| arm_4 | 246388..246464 | 5..81 | 97 | | Minus |
