FMO07749.5prime Sequence
1128 bp (1031 high quality bases) assembled on 2008-11-06
> FMO07749.5prime
CAGTCGACATGCAGTTTTGGATAACTCTGACATTTGCCGTGCACTTGGCT
ACGACCATCTGCCACGTAATGGCCGCAGTTACTGCTCCAACTCCGGCTGC
TCAGGTGGCAGCCCCACCTGTGCAAAAGTTTCACCTGACGCCCCACGATC
TGCAGATACTCGAGGGCACCGACACCCTCCTGCGCTGCGAGGTATCGAAC
CGGGCGGGCAAAGTCCAGTGGACCAAGGATGGCTTTGCGCTGGGATTCTC
GGCCGTAATTCCCGGATTCCCACGCTATTCTGTGCTGGTGGATGCCAAAC
AGAATGCCTACAATCTGCAGATCAAGAACGCCACGCTGGAGGACGATGCC
GAATACCAATGCCAGGTGGGTCCTGCTGCTGGAAATCCCGCCATTCGTGC
CAATGCCAAGTTGAGCATAGTGGCTGCTCCGAGTAGCATCGTTATCGAGG
GCTATGCCCGGAATGCCCGAGTGGAGGTGGAGGAGCGCCAGAATCTTACG
CTGCACTGTATCGCCGAGAACGCCAATCCGGCGGCGGAGATTGTCTGGTT
CCAGGGCGAAGTTCCAGTCTCCACGGCCCCCATCGTGACGGTGAATCAAA
CTGCCCCGAAGCGATTCACAACTAGCTCCACTTTGCACCTGCAGCCGCGC
GCCGAAGACGATTACAAGGAGTTCTCCTGCGAGGCGCGTCACAAGGCTCT
GCCCCCCGATGTACCGATGCGCGCCCAGGTGCAGCTCTCCGTACTCTATC
CGCCCGGCGCTCCGTTCTTTGAGGGCTACAGCCAGGGTGAGACCCTGCAT
CGCGGCCAGGAAGTTCAAATCGCCTGTCGAAGCCGCGGCGGCAATCCCCG
GGCCCAATTGACTTGGTACCGAAATGGCGTGCCATCAGTTCCCCACAACG
CACCTCGGGCCGTCTGTCGGAGACGTTTACAGTTCACGCCGCCGCCGAGG
ACATGGGGCTAATTTGTGTGCGAGGCCAAATCTGCTGGCGACACTCCTCT
GCCCGCGACTCATTTGACTGTCTGTATGCTCCAGGATGTTTTATCTTGAC
GGCGCCAATCAGCAGTCGGGATCGTGCACTAAGCTGCTGACATGGCCCTT
CGATCCAGGCCCGATAGCTGGTTCATAA
FMO07749.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:04:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| hbs-RC | 5478 | CG7449-RC | 396..1542 | 9..1128 | 4920 | 96.7 | Plus |
| hbs-RB | 4722 | CG7449-RB | 396..1542 | 9..1128 | 4920 | 96.7 | Plus |
| hbs-RA | 4701 | CG7449-RA | 396..1542 | 9..1128 | 4920 | 96.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:04:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 15035980..15036508 | 48..576 | 2645 | 100 | Plus |
| 2R | 25286936 | 2R | 15036864..15037131 | 748..1006 | 895 | 95.9 | Plus |
| 2R | 25286936 | 2R | 15036604..15036775 | 576..747 | 860 | 100 | Plus |
| 2R | 25286936 | 2R | 8812821..8813060 | 138..377 | 270 | 74.2 | Plus |
| 2R | 25286936 | 2R | 15011791..15011830 | 9..48 | 200 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 20:04:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| accord | 7404 | accord ACCORD 7404bp | 5186..5242 | 13..69 | 114 | 66.7 | Plus |
FMO07749.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:20:32 Download gff for
FMO07749.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| hbs-RB | 386..1461 | 1..1062 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:24:52 Download gff for
FMO07749.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| hbs-RA | 388..1463 | 1..1062 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:47:58 Download gff for
FMO07749.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| hbs-RA | 388..1463 | 1..1062 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:47:58 Download gff for
FMO07749.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 15011783..15011830 | 1..48 | 91 | -> | Plus |
| 2R | 15035981..15036508 | 49..576 | 100 | -> | Plus |
| 2R | 15036605..15036775 | 577..747 | 100 | -> | Plus |
| 2R | 15036864..15037154 | 748..1025 | 94 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:24:52 Download gff for
FMO07749.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 10899288..10899335 | 1..48 | 91 | -> | Plus |
| arm_2R | 10924110..10924280 | 577..747 | 100 | -> | Plus |
| arm_2R | 10923486..10924013 | 49..576 | 100 | -> | Plus |
| arm_2R | 10924369..10924659 | 748..1025 | 94 | -> | Plus |
