FMO07750.5prime Sequence
1161 bp (1006 high quality bases) assembled on 2008-11-06
> FMO07750.5prime
CAGTCGACATGAACAATCTGTCGCTGAAAGCTTGGCGTTCCACAGTCTCC
TGTGGCCCCAATCTTCGACAATGTGTGCCGAGGATCAGTGGAGCAGGTTC
CAGGCGAGCGCAGTGCCGCGAAAGCTCCACGGGCGTGGCCACTTGTCCCC
ATCTGGCGGATTCGGAGGAGGCCAGTGCACCGCGAATACACTCCACTTCC
GAGTGGCAAAACGCTCTGCCCTACAATCAAATACCCGGACCTAAGCCCAT
CCCCATTCTGGGCAATACATGGAGACTGATGCCAATAATTGGTCAATACA
CCATCTCTGATGTGGCCAAAATATCATCGCTGCTGCACGATCGTTATGGT
AGAATTGTGCGTTTTGGAGGTCTTATAGGACGGCCCGATCTTTTGTTCAT
CTACGATGCCGATGAAATTGAAAAGTGCTATCGTAGCGAGGGACCCACCC
CGTTCCGTCCCTCGATGCCCAGTTTGGTCAAGTACAAGAGTGTGGTGCGC
AAGGATTTCTTTGGGGATCTGGGCGGCGTAGTCGGAGTACATGGAGAGCC
TTGGCGGGAGTTCCGTTCGCGTGTCCAGAAACCGGTGCTGCAGTTGTCCA
CCATTCGCCGGTATCTACAGCCGCTGGAGGTTATCACCGAGGACTTCCTG
GTGCGCTGCGAAAACCTGTTGGATGAAAACCAAGAGCTCCCCGAGGATTT
CGACAATGAGATTCACAAATGGTCCCTGGAATGCATTGGTCGCGTTGCCC
TCGACACTCGTTTGGGCTGCCTGGAATCGAATCTGAGCCAGATTCGGAAC
CCCAGCAAATCATTGACGCCGCCAAGTATGCCCTGCGCAACGTGGCCACT
TTGGAGCTGAAAGCTCCTTATTGGAGATACTTTCTCACGCTTTGTGGACG
CTGCTACGTGAAGAACATGAACTTTTTTTGTTGGTGTCTGCATGAAGTAC
CATTCAGAGTGCCACCGAAAGACTGAGACCCAAGATCCCAGTCTACGTGC
CGTCGAAGTCCTGCCTGGTGGAGAAGTCATTCTTTTCGCAGAAGGACGAA
AAATAGCCACCATTTATGGCACTTGATTTTGATTCTTCGTCGAAATGATA
TCGAATCCATGGCTGTTTGTTCGATGTTACCACTTGCCAACGTCTCAGTG
GATCAGCAAGG
FMO07750.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:55:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cyp301a1-RA | 1940 | CG8587-RA | 174..1325 | 9..1159 | 5160 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:55:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12566358..12566623 | 9..274 | 1330 | 100 | Plus |
| 2R | 25286936 | 2R | 12567651..12567845 | 539..733 | 975 | 100 | Plus |
| 2R | 25286936 | 2R | 12567905..12568101 | 733..928 | 810 | 97.5 | Plus |
| 2R | 25286936 | 2R | 12567184..12567336 | 273..425 | 765 | 100 | Plus |
| 2R | 25286936 | 2R | 12567482..12567596 | 424..538 | 575 | 100 | Plus |
| 2R | 25286936 | 2R | 12568163..12568307 | 934..1079 | 355 | 90.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:55:38 has no hits.
FMO07750.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:10:08 Download gff for
FMO07750.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp301a1-RA | 166..1323 | 1..1161 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:46:24 Download gff for
FMO07750.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp301a1-RA | 168..1325 | 1..1161 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:34:37 Download gff for
FMO07750.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp301a1-RA | 168..1325 | 1..1161 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:34:37 Download gff for
FMO07750.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12566352..12566623 | 1..274 | 98 | -> | Plus |
| 2R | 12567186..12567336 | 275..425 | 100 | -> | Plus |
| 2R | 12567484..12567596 | 426..538 | 100 | -> | Plus |
| 2R | 12567651..12567844 | 539..732 | 100 | -> | Plus |
| 2R | 12567905..12568106 | 733..934 | 97 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:46:24 Download gff for
FMO07750.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8453857..8454128 | 1..274 | 98 | -> | Plus |
| arm_2R | 8454691..8454841 | 275..425 | 100 | -> | Plus |
| arm_2R | 8454989..8455101 | 426..538 | 100 | -> | Plus |
| arm_2R | 8455156..8455349 | 539..732 | 100 | -> | Plus |
| arm_2R | 8455410..8455611 | 733..934 | 97 | -> | Plus |
