FMO07754.5prime Sequence
1132 bp (932 high quality bases) assembled on 2008-11-06
> FMO07754.5prime
CAGTCGACATGAATCTGATCAACATGGACTCGGAAAACAGGGTGGTGCTC
AATGTGGGTGGCATTAGGCACGAAACCTACAAGGCCACGCTGAAGAAGAT
TCCGGCTACGCGATTATCGCGATTAACAGAGGCGCTGGCCAACTATGATC
CGATACTGAATGAGTACTTCTTTGATCGGCATCCGGGCGTCTTCGCACAA
GTGCTCAACTATTACAGAACTGGAAAGCTGCATTATCCCACGGATGTGTG
CGGTCCGCTGTTTGAGGAGGAATTGGAGTTCTGGGGCCTAGACTCGAACC
AAGTGGAGCCCTGCTGTTGGATGACCTACACACAGCATCGCGACACCCAG
GAAACCCTAGCCGTACTCGATCGTCTCGATCTGGATACGGAAAAACCGTC
CGAAGAGGAATTGGCACGCAAATTCGGCTTCGAGGAGGACTACTACAAAG
GCACAATATCCTGGTGGCAGGAAATGAAGCCGCGCATTTGGTCCTTGTTC
GATGAGCCCTACAGTTCCAATGCAGCCAAAACTATTGGCGTGGTTTCGGT
GTTCTTCATCTGCATTTCAATCCTGTCGTTCTGCCTGAAGACCCATCCCG
ATATGCGGGTACCCATCGTCCGGAACATTACAGTGAAAACTGCGAATGGA
AGTAATGGCTGGTTTTTGGACAAAACGCAGACCAATGCGCACATAGCCTT
CTTCTATATCGAATGCGTGTGCAATGCCTGGTTTACCTTTGAAATATTGG
TGCGCTTTATCTCATCGCCGAACAAGTGGGGAGTTCATCAAGTCATCTGT
TAACATCATAGACTACATAGCGACGCTTATTTTTTATATCGATCTATTGC
TTCAGCGGTTCGCATCGCACCTGGGAAACGCTGACATCCTCGAGTTCTTC
TCGATCATCCGCATCATGCGTCTGTTCAGCTGAAGCGCCACTCGTCCGGA
CTGAAAATCTGATCCAGACTTTCCGGCCTCGCCAAGGAGCTGACCCTGCT
GGTGTTCTCCTCGTCTGGCATCTTGATCTTCGCAGGCCTTTTCAACTACG
CGGAAGCAATCAAGCCAATCCGACAAAAGACTTCAACAGCTATACGCTTG
GCCCGTGTGGGTGGCCCTGGTTCAAATGAACA
FMO07754.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:42:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Shaw-RE | 4380 | CG2822-RE | 457..1575 | 8..1121 | 4910 | 96.7 | Plus |
| Shaw-RD | 4557 | CG2822-RD | 303..1421 | 8..1121 | 4910 | 96.7 | Plus |
| Shaw-RC | 2428 | CG2822-RC | 45..1163 | 8..1121 | 4910 | 96.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:42:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 3722353..3722573 | 531..751 | 1090 | 99.5 | Plus |
| 2L | 23513712 | 2L | 3721380..3721589 | 8..217 | 1050 | 100 | Plus |
| 2L | 23513712 | 2L | 3722652..3722963 | 749..1054 | 1005 | 93.3 | Plus |
| 2L | 23513712 | 2L | 3721820..3722016 | 333..529 | 985 | 100 | Plus |
| 2L | 23513712 | 2L | 3721640..3721762 | 213..335 | 615 | 100 | Plus |
| 2L | 23513712 | 2L | 9384640..9384785 | 217..72 | 295 | 80.1 | Minus |
| 2L | 23513712 | 2L | 9381661..9381765 | 320..216 | 240 | 81.9 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:42:46 has no hits.
FMO07754.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:10:03 Download gff for
FMO07754.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Shaw-RC | 41..1048 | 1..1008 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:36:29 Download gff for
FMO07754.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Shaw-RC | 41..1048 | 1..1008 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:26:35 Download gff for
FMO07754.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Shaw-RC | 41..1048 | 1..1008 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:26:35 Download gff for
FMO07754.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 3721376..3721589 | 1..217 | 98 | -> | Plus |
| 2L | 3721645..3721762 | 218..335 | 100 | -> | Plus |
| 2L | 3721823..3722017 | 336..530 | 99 | -> | Plus |
| 2L | 3722353..3722571 | 531..749 | 99 | -> | Plus |
| 2L | 3722653..3722919 | 750..1012 | 95 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:36:29 Download gff for
FMO07754.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 3721376..3721589 | 1..217 | 98 | -> | Plus |
| arm_2L | 3721645..3721762 | 218..335 | 100 | -> | Plus |
| arm_2L | 3721823..3722017 | 336..530 | 99 | -> | Plus |
| arm_2L | 3722353..3722571 | 531..749 | 99 | -> | Plus |
| arm_2L | 3722653..3722919 | 750..1012 | 95 | -> | Plus |
