FMO07758.5prime Sequence
1139 bp (1013 high quality bases) assembled on 2008-11-06
> FMO07758.5prime
CAGTCGGACATGGCTGCTGAGGAGGGAAAGTTTGACAACATACTGCTGGC
CGTGGCCGAGAAGCATCACGGTGGCGTGCCCGAGTTCCTTGGCACTTTGG
CCAGTTTTCTGCGCCGCAAGACCGACTTCTTCACGGGAGCCAAGCAGACG
GAGTGGGAGAAGCTGCTGCTGGATGTCTTCAACAAGGAGTCCAAGCTGGC
CGTAACTGAAAACTACGAAAAGATAAAGGCTCGCGAAGCTTCCCAGCGCC
TAAAGGCGGAGAAGGAGAGAGCCGAAAGGAAGGCCCGCAAGCAGGAGATT
GACGATAATAAAATATGTGATATCACTGACGAAGAGGCAGCGGCCATTAT
CAAGGAGGAGGAGACCAAAAAACGCCAGCAGCTGCTGGATAGCGCTGGTG
GAGAGCCATCTGCCTCGAACCGAGATGGCATCTCCAAGCCCATCGAGAAA
GTGGACGATGAATCCGATAAGAGTGAGCTGGGTAAGCTGATGCCGAATGC
AGGCAATGGCTGCACCTTGGAAAACTACACCTGGACCCAAACTCTGGAGG
AGGTGGAGCTCAAGATTCCGTTCAACTTAACATTCGGTCTACGCGCCCGT
GATCTAGTGATCAGTATTGGTAAGAAGTCGCTGAAGGTGGGCATCAAAGG
TCAAACGCCCATCATCGATGGCGAACTGTGCGGCGAGGTGAAGACGGAGG
AGTCCGTGTGGGTCTTGCAAGACAGCAAAACCGTGATGATCACTCTTGAT
AAGATCAATAAGATGAACTGGTGGAGCCGCCTGGTCACAACCGATCCAGA
GATCTCGACGCGCAAGATCAATCCAGAGTCTTCCAAGCTTTCTGATCTGG
ATGGGGAGACTCGCAGTATGGTGGAGAAGATGATGTATGATCAGCGACAG
ATGAGTTGGGTCTTCCCACCAGCGAGGATCGCAAAAAACAGACATACTTG
AGAAATTTAAGCAACAGCATCTGAAGATGACTTCTTCAAGTGTAAATTCA
ATGCAAGCTTTCTAGACATTCGTTGGCGCGCGGCCAGGTAAGTTGGTCAT
AATCATAATCTAAATCATATATCTAATCACACTAGCTAGGAAAATCCTGG
TCATGACCTATTCCTGATCTCTACACAATAAAACCGCCC
FMO07758.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:39:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| nudC-RB | 1622 | CG9710-RB | 510..1506 | 9..1002 | 4835 | 99.3 | Plus |
| nudC-RA | 1238 | CG9710-RA | 126..1122 | 9..1002 | 4835 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:39:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16818905..16819304 | 557..954 | 1885 | 99.2 | Plus |
| 3L | 28110227 | 3L | 16808693..16808978 | 83..368 | 1430 | 100 | Plus |
| 3L | 28110227 | 3L | 16809168..16809357 | 369..558 | 950 | 100 | Plus |
| 3L | 28110227 | 3L | 16808544..16808619 | 9..84 | 380 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:39:57 has no hits.
FMO07758.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:20:31 Download gff for
FMO07758.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nudC-RA | 123..1125 | 9..1009 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:06:57 Download gff for
FMO07758.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nudC-RA | 126..1128 | 9..1009 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:21:54 Download gff for
FMO07758.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nudC-RA | 126..1128 | 9..1009 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:21:54 Download gff for
FMO07758.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16808544..16808619 | 9..84 | 100 | -> | Plus |
| 3L | 16808695..16808978 | 85..368 | 100 | -> | Plus |
| 3L | 16809168..16809357 | 369..558 | 100 | -> | Plus |
| 3L | 16818907..16819304 | 559..954 | 99 | -> | Plus |
| 3L | 16819368..16819416 | 955..1002 | 92 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:06:57 Download gff for
FMO07758.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16801644..16801719 | 9..84 | 100 | -> | Plus |
| arm_3L | 16801795..16802078 | 85..368 | 100 | -> | Plus |
| arm_3L | 16802268..16802457 | 369..558 | 100 | -> | Plus |
| arm_3L | 16812007..16812404 | 559..954 | 99 | -> | Plus |
| arm_3L | 16812468..16812516 | 955..1002 | 92 | == | Plus |
