FMO07761.5prime Sequence
1143 bp (1003 high quality bases) assembled on 2008-11-06
> FMO07761.5prime
CAGTCGACATGGTCTCGCCATTGATAATTCTTTTAATTATTTGGCTCTCC
GTGGGCGCAAAGTCAGTGGAGATCGCCAGTATAAACCATCCCTGTGCCTA
CGCCCACACGGTCAACATTACGGATGGACTGCGGATGAAGGATGGCTCCT
ACTCATACGCTGGAGTAGTGGTCCCACCGCATCTGATGGCGGAGTACTCC
TTCAAGGTGATCGATGGAGTGGAGTACCGGGCCAAGAAACATCTGCGCGG
CTGCGTCTGTCTGCTGAAGCCCTGCATCAGTTTCTGTTGTCCGGAGAACC
TCGTCTTTGATGCCAAGCACTGGAACTGCACAATGCCACACCAAGTCCGC
GAGTCCACTCACGTGGAGCTCACCTACGCTAACAGGACTGTGGATCAAGT
ACGCATACGCGATCGTTTTGTGGTGCGCACAGAGCTGGGTTGCCGGAACA
AATTCGTGGACAAAAAGCACGATAACTTCTGGCAATGGGACCTCTTCGAG
AATGGAACTCTGCGGCGGGACAATCGTCTGTGGTCAACGGATGAGTATTG
CTTTAGCCCGTTGGAGCACAATCCGGAGCAGTGGGAGCTCACTCCGCTCA
ACTGCGAACGCTTTCAAACGGGGTACCGGGTTTGGATTTACGCCATTTGC
AGTATTATAGCCATCATTATAAACATTTTCATACTCTCCCTACTTGGATC
TGTGAGAGATGCCCGTAAAAGCCACTATGGCCAGTTAATCATCTACTACT
TGCTGTCCATGATCGTTGGTTACTCCCTGTTGGTCTACTTGGCCTTGAAG
AATCCCATGAAGCTCTCGCATGTGGCTTGCAGAAACATAGGATTTCTGGC
CTACTTCTGCATCATGCTCTCCTTCGTCTTTCTGGCCATTTGCAGTCTTG
ACTTTCTGCTCAAATTAAACAAAAGCTGTCAGGAGCTCCGTCCGTCGATT
GTCCTTTGCTCTGGCAGTCTGGCGTGATTGTCTCGGTTTTTGTCCTCCTT
AACCCAGGACTCCAAGCTGCCCAAGCCACTTTCAAGCCAAGCATGGGAGA
AAGATTACTGCTGGTTCGATGTTCGCACCTGGGGTATTTTGATCTAACTA
CTAACGAACCATGGCACTCCTCCTGAATATTTGACCATTGTAT
FMO07761.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:43:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mthl9-RA | 2133 | CG17084-RA | 373..1508 | 8..1143 | 5245 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:42:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 331296..331937 | 649..8 | 3210 | 100 | Minus |
| 3L | 28110227 | 3L | 331048..331240 | 841..649 | 965 | 100 | Minus |
| 3L | 28110227 | 3L | 330756..330991 | 1071..839 | 680 | 92.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:42:59 has no hits.
FMO07761.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:10:18 Download gff for
FMO07761.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mthl9-RA | 362..1505 | 1..1143 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:36:38 Download gff for
FMO07761.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mthl9-RA | 365..1508 | 1..1143 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:26:41 Download gff for
FMO07761.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mthl9-RA | 365..1508 | 1..1143 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:26:41 Download gff for
FMO07761.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 330756..330989 | 841..1071 | 94 | <- | Minus |
| 3L | 331049..331240 | 649..840 | 100 | <- | Minus |
| 3L | 331297..331945 | 1..648 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:36:38 Download gff for
FMO07761.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 330756..330989 | 841..1071 | 94 | <- | Minus |
| arm_3L | 331049..331240 | 649..840 | 100 | <- | Minus |
| arm_3L | 331297..331945 | 1..648 | 99 | | Minus |
