FMO07762.5prime Sequence
1137 bp (1020 high quality bases) assembled on 2008-11-06
> FMO07762.5prime
CAGTCGACATGCGCCTGCTGATATTGCTACTGCTGCCACTGGTGGCCATC
GCCCAAGATGACTACTGCTTCAGCAAGGACACCTCCCGCCTCCAGACCCG
CCAGTTCTCCTCGAAGACCGCCTATCAGATCGTCAAGGGCACGGACATTG
ACAAGCAGTACCTGGTGCCCGGCTGTCAGCCCCAGAAGATGTGGATCTTT
CACAGGCACGGCACACGACTGCCCAAGAAGAGCATGATCAACAAGGCGTC
CAGGGTGGCTGAGCTGCGCGATCTCATCATTAACAACTACCAAGTGGCCA
GGACCAAGCCCGAAACGGATGCTCTCTGCCAGACGGATCTGATTGCCATC
AAGTTGTGGAAGTGGAACAGCAGCATAACGCCCGACATGGAGGAGTATCT
GACCGCCCAGGGCTACGAGGATCTCAGGGGCACGGCCAAGCTGTACCAGC
GGTACTATCCCACTGTGCTGACCGCTAACTATAATGACACTTACTACCAG
TTCCGCCATACGGACACCCAGCGCACCACGGAAAGTTTCAAGGCTTTCGC
CGAGGGTCTGTTTGGATCCCAAAACGCTGCTCATCCCGTCGAGATTCCCA
AGCAGGATCTGCTGCTGCGTCCCTATGACTATTGCTCCTCTTTCAAGAAT
GTGAACTACAAGGATGAGGGCTCTGAGTACTACAAGTTTCATCAGTCGAA
GCTGTACACGACACGTTGGCGGATATCTCCACTCGATTGGGTTTCCTTTA
CACCCTGGAGGAGGCGGACATCAAGCTAATGTACGATATGTGTCGCTATG
AGCAGGCGTGGAATGTGGACCGCAATAGCGTCTGGTGCGGCGCCTTCTTG
CCGGAGCAAATAACGGTCTTTGAGTACCTGGAAGATCTAAGTACTACTAT
GGCTCGGGCTATGGTTTCCCGGAAAACGCACATCTCAACTGCCGACTGGT
GCAGACTGCCTCACCACCTGAGCAATCGTGTCGCGCATGTGTAGCTCATT
CGGTCACTCGACTGTCTCCTACCTCTCCCTTACTGCCCTGGATCCAGAAG
AACGAACTTCTAGTGTGCCGCCGAACATTACATTGTTTGAACATAGCCGC
CCGTGGAAGACACCTTATCGAATCGTTTGTCCCCAAT
FMO07762.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:35:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mipp1-RC | 2009 | CG4123-RC | 133..1272 | 9..1137 | 4890 | 96.3 | Plus |
| Mipp1-RA | 1828 | CG4123-RA | 133..1272 | 9..1137 | 4890 | 96.3 | Plus |
| Mipp1-RB | 1769 | CG4123-RB | 74..1213 | 9..1137 | 4890 | 96.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:35:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16565609..16565863 | 263..9 | 1275 | 100 | Minus |
| 3L | 28110227 | 3L | 16565033..16565271 | 500..262 | 1195 | 100 | Minus |
| 3L | 28110227 | 3L | 16564719..16564962 | 741..499 | 1170 | 99.6 | Minus |
| 3L | 28110227 | 3L | 16564377..16564517 | 954..815 | 655 | 99.3 | Minus |
| 3L | 28110227 | 3L | 16564573..16564649 | 817..741 | 385 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:35:15 has no hits.
FMO07762.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:10:17 Download gff for
FMO07762.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mipp1-RA | 129..1181 | 9..1050 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:34:14 Download gff for
FMO07762.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mipp1-RB | 67..1126 | 1..1050 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:08:22 Download gff for
FMO07762.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mipp1-RB | 67..1126 | 1..1050 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:08:22 Download gff for
FMO07762.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16565033..16565269 | 264..500 | 100 | <- | Minus |
| 3L | 16565609..16565870 | 1..263 | 98 | | Minus |
| 3L | 16564272..16564517 | 815..1050 | 93 | <- | Minus |
| 3L | 16564576..16564648 | 742..814 | 100 | <- | Minus |
| 3L | 16564719..16564960 | 501..741 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:34:14 Download gff for
FMO07762.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16557676..16557748 | 742..814 | 100 | <- | Minus |
| arm_3L | 16558133..16558369 | 264..500 | 100 | <- | Minus |
| arm_3L | 16557372..16557617 | 815..1050 | 93 | <- | Minus |
| arm_3L | 16557819..16558060 | 501..741 | 99 | <- | Minus |
| arm_3L | 16558709..16558970 | 1..263 | 98 | | Minus |
