FMO07763.5prime Sequence
1130 bp (936 high quality bases) assembled on 2008-11-06
> FMO07763.5prime
CAGTCGACATGATCCTCGAGAGAAACCGGAGGTGCCAGCTGGCCCTCCTC
ATGATCGCAATACTGGCCGCCATCGCTGGACAAACGGATGCCCAGAAGGC
GGCCAAACTGACGGCAGTGAGCACATGTGCATCGAAGGAAAAGTGTCACA
CCTGCATCCAGACAGAGGGTTGCGCCTGGTGCATGCAGCCGGACTTTAAG
GGCCAGTCGCGGTGCTACCAAAACACCAGCTCACTGTGTCCGGAGGAGTT
CGCCTACAGTCCGATAACAGTTGAGCAGATTCTAGTGAACAACAAACTAA
CGAATCAATACAAAGCTGAACTGGCGGCTGGTGGCGGCGGCTCCGCCATG
TCCGGCAGCAGCTCAAGCTCCTACTCGTCGAGTTCGAGCTCGTCGAGCTT
CTACTCGCAGAGCTCCTCGGGATCCAGTTCCGCCAGCGGATACGAAGAGT
ACTCTGCCGGCGAAATTGTCCAAATCCAACCGCAGTCCATGCGACTCGCA
TTGCGCGTCAATGAGAAACACAACATCAAGATTAGCTATTCCCAGGCGGA
GGGATATCCGGTGGATCTCTACTACTTGATGGATCTCTCCAAATCTATGG
AGGACGACAAGGCCAAATTGTCTACGCTGGGCGACAAGTTGTCCGAGACC
ATGAAACGCATCACCAACAATTTCCATCTTGGTTTCGGTTCGTTTGTGGA
CAAGGTGCTTATGCCCTATGTCTCGACCATTCCCAAAAAACTCGAGCATC
CATGCGAAAACTGCAAGGCTCCCTATGGTTACCAAAATCACATGCCACTC
AACAATAACACCGAAGCTTCTCTAACGAGGTGAAGAATGCCCACAGTGTC
GGGCAACTTGGATGCTCCCGAAAGAAGTTTCGATGCCATCATGCAGCCCA
TTGCCTGCCGATCGCAGATCGGGTGGCGGGGAACAGGCTCGTCGGCTGTT
GGTCTTCTCGACGGACGCCAGCCTTCAATATGCCTGGCGATGGCCAATTG
GGGGCGGTGGTGATTGCTCCTAAACGATGGCGAGTGTCACTTGGAGTCCC
AAGGCGATCACCCGCTATTCGACGCTGCAAGATTATCCCAGTATTTTCCA
GATCACCGAAAAGGTCCAAGGACATGGCAC
FMO07763.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:41:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mys-RD | 4397 | CG1560-RD | 554..1662 | 8..1124 | 5005 | 97.2 | Plus |
| mys-RC | 4187 | CG1560-RC | 344..1452 | 8..1124 | 5005 | 97.2 | Plus |
| mys-RA | 4042 | CG1560-RA | 199..1307 | 8..1124 | 5005 | 97.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:41:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 8063957..8064464 | 8..515 | 2525 | 99.8 | Plus |
| X | 23542271 | X | 8064533..8064761 | 511..739 | 1130 | 99.6 | Plus |
| X | 23542271 | X | 8067062..8067346 | 824..1116 | 725 | 88.7 | Plus |
| X | 23542271 | X | 8065448..8065523 | 740..815 | 380 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:41:39 has no hits.
FMO07763.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:10:15 Download gff for
FMO07763.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mys-RA | 191..1298 | 1..1116 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:51:54 Download gff for
FMO07763.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mys-RA | 193..1300 | 1..1116 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:15:06 Download gff for
FMO07763.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mys-RA | 193..1300 | 1..1116 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:15:06 Download gff for
FMO07763.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 8063951..8064459 | 1..510 | 99 | -> | Plus |
| X | 8064533..8064761 | 511..739 | 99 | -> | Plus |
| X | 8065448..8065532 | 740..823 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:51:54 Download gff for
FMO07763.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 7957984..7958492 | 1..510 | 99 | -> | Plus |
| arm_X | 7958566..7958794 | 511..739 | 99 | -> | Plus |
| arm_X | 7959481..7959565 | 740..823 | 98 | -> | Plus |
