FMO07775.5prime Sequence
1152 bp (1014 high quality bases) assembled on 2008-11-06
> FMO07775.5prime
CAGTCGACATGTCCTCCGGAAAGATCCTGCCACGTCGCCAGGCGGTGCCA
GTGCTCTACACCAGGGGCACCCATTACGAAGTTGGCTTCGATATGGGTCG
CACATTTGGGTCCATGATCAAGAACTTTCTGATCTTATCGAAGCCCCTCA
ACGAGACCTACTTGCCGCTCTACCAGTCGCCAAAAGGCAGGCAGATCTAC
AACGAGACCCTGGGTTCGGTGAAGGACAGCTTCCCTCAATATGTGCGCGA
ACTGGAGGGCGTGGCCGATGGTGCGGAGGTGGAATTCCATAAGCTATTTT
TGCTGCATCTGGATGAGATTCTACCGCAGGCATTGAAGCACCAACCACGT
AGCAAAAACCAACCAACCGGCTGCTCCACCATCATTGTTAACCAAAAGAA
TTGCCGCCTTTTGGGCCACACGGAGGATGCACTGACGGAGACCCTGAATC
ACTACTACTTCGTGGTGGCACACATCATCAGTGACAAGCCGCAGGGCAAG
TACAACGTTAAGGAGGAGCACTTCATGTCCCTCTGCTACGCTGGCCATCT
GCCCGGATACACTATGAGCCATAATCATCATGGATTGGTCTTCAGCATCA
ACACCATCAGTGCGGAGCTCTTGCGCAGCGGCAAGACACCGCGACACTTC
ATCACCCGGGCTCTGTTGGCCACCAGCAACGTGGACGATGCCTTCCGCGT
GCTCAAGGATGCGGGAGTGGGTGCAGCGGATGCCTGTTCCATCAATTTCA
CCTTCCTGGCGGATCCCGCCAAATGTGCTACAATGTGGAGATGGCACCAT
CGCCGGACCGCAAGAATGAGTCTCATTTGAATATCAAGGAGGTGCCGCTG
GGCGAGCACAACTACCATGTCAATCAATTCGATCGCATTCGGCAGGATCA
GGCCACGATCTGATGATTAGCTCGAGCATCTCCAGGATGCAAACATTTGG
AGCGTACAACCGCCGATGAGCGAGCAAGAATGTGCGCCACATGCTGGGGC
GACGTGTCCGCGGGAGTTACTGCGTCTGGCTGGAGAACAACAGCCTGCGA
CGGAGGGGAGTCAGAACATTGCGGTTGACTCTTCGATTCAGTGCCAGGAT
CATTTCCCTGGAATCCCAACATTCCAGCGAGAACGGAGACCACACTGCGC
CC
FMO07775.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:15:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| t-RB | 1632 | CG12120-RB | 232..1371 | 9..1148 | 5160 | 97.5 | Plus |
| t-RA | 1975 | CG12120-RA | 232..1371 | 9..1148 | 5160 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:15:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 9218953..9219187 | 639..405 | 1175 | 100 | Minus |
| X | 23542271 | X | 9218773..9218894 | 761..640 | 610 | 100 | Minus |
| X | 23542271 | X | 9218273..9218529 | 1132..877 | 570 | 89.3 | Minus |
| X | 23542271 | X | 9219253..9219365 | 404..292 | 565 | 100 | Minus |
| X | 23542271 | X | 9218588..9218699 | 876..765 | 560 | 100 | Minus |
| X | 23542271 | X | 9221210..9221313 | 293..190 | 520 | 100 | Minus |
| X | 23542271 | X | 9221415..9221510 | 190..95 | 480 | 100 | Minus |
| X | 23542271 | X | 9222939..9223026 | 96..9 | 440 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:15:55 has no hits.
FMO07775.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:17:46 Download gff for
FMO07775.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| t-RA | 232..1349 | 9..1125 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:22:56 Download gff for
FMO07775.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| t-RA | 232..1349 | 9..1125 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:11:11 Download gff for
FMO07775.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| t-RA | 232..1349 | 9..1125 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:11:11 Download gff for
FMO07775.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 9221210..9221313 | 190..293 | 100 | <- | Minus |
| X | 9221416..9221509 | 96..189 | 100 | <- | Minus |
| X | 9222940..9223026 | 9..95 | 100 | | Minus |
| X | 9218588..9218704 | 761..876 | 99 | <- | Minus |
| X | 9218774..9218894 | 640..760 | 100 | <- | Minus |
| X | 9218953..9219187 | 405..639 | 100 | <- | Minus |
| X | 9219253..9219363 | 294..404 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:22:56 Download gff for
FMO07775.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 9112621..9112737 | 761..876 | 99 | <- | Minus |
| arm_X | 9112807..9112927 | 640..760 | 100 | <- | Minus |
| arm_X | 9112986..9113220 | 405..639 | 100 | <- | Minus |
| arm_X | 9113286..9113396 | 294..404 | 100 | <- | Minus |
| arm_X | 9115243..9115346 | 190..293 | 100 | <- | Minus |
| arm_X | 9115449..9115542 | 96..189 | 100 | <- | Minus |
| arm_X | 9116973..9117059 | 9..95 | 100 | | Minus |
