FMO07776.5prime Sequence
1123 bp (953 high quality bases) assembled on 2008-11-06
> FMO07776.5prime
CAGTCGACATGGACGTTCGGATTAAGTGCAACAGCGAGGAGCCAGAGTCT
CCGGAGCAGAAGATCCTGGCGAGCAGCCAGCGCCTGCTGCAGTTCACCAA
CTGCCGCCTTGTACGCGACCACCGGATCATCCACGACGATCTGTGGGTTC
GCGACGGTCGGATCGTGAACCCAGAGCCTGTGTTCTTCGACGAGCGGACC
AAGGCCCACTGTCGCATCGACTGCGGGGGCGCCATCATCGCGCCCGGCTA
CATCGACCTCCAGATCAATGGTGGCTATGGCGTGGACTTCTCGTACGACA
CGGAGACCATCGAGGAGGGCGTGGCCACGGTGGCACGCGGCCTGGTCAAG
AGCGGAGTCACCTCCTTCTGTCCCACGCTGGTGACCTCGCCCAGCGACAG
CTACCACACCATCCTGCCGCGCATTCCCGCAGAGGTTCCCAAGGGCGCCG
GCATACTGGGCATCCATGCGGAGGGTCCGTTTATCAATCCGCAGAAAAAG
GGCGCGCATCCGGAGCACTGCATCCAGACCATTGATAAGGGACTCAGCAC
GCTGAAGGAGACGTACGGCTCGCTGGAACGCATTAAAATCATCACCCTGG
CGCCGGAGAAGGTCACCGACCCGGAGGTGATTGGCCAGCTGGTGGAGCGT
GGCATCACCGTGGCCCTGGGCCACTCGATGGCCTCGCTAAGCGACGGAGA
GAGGGCCGTGCAGCAGGGCGCCACGCTGATCACGCATCTGTTCAACGCCA
TGCTGCCGTTCCATCACCGCGATCCCGGCCTGGTGGGACTGCTGGCCTCC
GGACGCAGTGCCGCACGGTAGGACCGTTGTACTTTCGGCATCATCTCGGA
CGGAGTGCACACTCATTCCGGCGGCACTGAAGGATCGCCTACCGCACGCA
TCCCCCAGGCCCTGATCCTGGTGACGGACGCCATTATCGGCGCTGGTCCT
CGAGGAGGGTGTCCACCACATCGGACAGCTGCCGCTGCAGGTTAAGCAGG
GCAAGGCGTTCATCGCAAGCACAGAGACCCTGTGCGCACACTCGCCCCGA
TGACAGATTGCTTCGGAATCTTTCGAAAGGCGAACGAACTGTCCGTGGTC
TTGGCAATGAGCGCGGCCACCCT
FMO07776.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:36:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17065-RD | 1624 | CG17065-RD | 163..1269 | 9..1121 | 4935 | 97.1 | Plus |
| CG17065-RA | 1556 | CG17065-RA | 95..1201 | 9..1121 | 4935 | 97.1 | Plus |
| CG17065-RB | 1598 | CG17065-RB | 95..625 | 9..539 | 2655 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:36:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 20255183..20255675 | 1036..537 | 2075 | 97.6 | Minus |
| X | 23542271 | X | 20255763..20256033 | 540..270 | 1355 | 100 | Minus |
| X | 23542271 | X | 20256773..20257037 | 273..9 | 1325 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:36:12 has no hits.
FMO07776.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:17:45 Download gff for
FMO07776.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17065-RA | 90..1137 | 1..1057 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:48:25 Download gff for
FMO07776.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17065-RA | 90..1137 | 1..1057 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:06:58 Download gff for
FMO07776.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17065-RA | 90..1137 | 1..1057 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:06:58 Download gff for
FMO07776.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 20255764..20256032 | 271..539 | 100 | <- | Minus |
| X | 20256776..20257042 | 1..270 | 98 | | Minus |
| X | 20255161..20255672 | 540..1057 | 96 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:48:25 Download gff for
FMO07776.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 20126187..20126698 | 540..1057 | 96 | <- | Minus |
| arm_X | 20126790..20127058 | 271..539 | 100 | <- | Minus |
| arm_X | 20127802..20128068 | 1..270 | 98 | | Minus |
