FMO07781.5prime Sequence
1134 bp (926 high quality bases) assembled on 2008-11-06
> FMO07781.5prime
CAGTCGACATGGATAACAGTAGCGGTCAAAACAGCAGAACGGCTTCGTCA
GCGTCCACAAGCAAAATAGTCAACTATTCGTCACCAGTCTCGCCAGGAGT
CGCAGCCGCCACCTCCTCATCCTCATCATCCAGCAGCAGCGGCATGAGTA
GCAGCCAGGAGGACACCGTACTGGGATTATTTACGCCCAAAAAGGAGTTC
CCCAATGCCAAGATGCTGCAGACCATCAGGGAGAAGCTAATGACGCCCGG
CGGAGCCTGTGACCTTCTGGCCCTGGGCATCGCAGCGGAACCCACAGACC
AGCAGCCCGTCAAGCTCATCCAACAGCGTTATCTGATCAGCGCACAGCCT
AGTCACATATCGGCCGCCGTGGCTGCCAAGACTCCCGCCTCGTATCGCCA
CTTGGTCGATCTAACCGCCTCCAATCTGCGCTGCGTGGACATCTTCACCG
GGGAGCAGTTCCTCTGCCGTATTGTAAACGAACCGTTGCATAAGGTGCAA
CGAGCCTACTTTCAGCTGCAGCAGCACGACGAGGAGCTACGCCGGAGCAC
CATCTATGGCCATCCACTGATCCGACCCGTGCACGATATCATACCGCTTA
CCAAGGATCGCACCTACATCCTCATTGCGCCCGTGCCCCAGGAGAGGGAC
TCCACGGGTGGGGTGACCGGGGTGTACGAGAACCTGCACATCTACATCCG
CCACGCGAAGCGACTGTGCGAGACGGAGGCGAGGGCCATATTCCACCAGA
TCTGTCAGACTGTTCATTGTGCCACCGCAACGGGATTATCCTCAAGGACC
TCAAGCTCAAGCGGTTCTACTTCATCGACGAGGCCAGAACGAAACTGCAG
TATGAATCACTGGAAGGCTCATTGATCCTCGACGGCGATGACGATACTCT
GAGCGACAGATCGGTTGCCACTGTACACGGCTCAGAACTGCTGTGCCCCA
GCAAACGTACAAGGGCAAACCGGCGGGACAGTGGTCGCTGGGCGTGATCC
TGTACACCATTTTGGTGGGTCAGTTACCCGTTCTAGGAAAAGGCCACTGC
CATCTCATCACCGTCATACGCCACGGGAATGGTCCAAAATCCCCTGAACC
TGTCTAATTCGGTGCAATGGCGTGTTTGCTTCCC
FMO07781.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:48:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| trbl-RA | 2372 | CG5408-RA | 354..1471 | 8..1121 | 5085 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:48:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20400426..20401256 | 837..8 | 4060 | 99.5 | Minus |
| 3L | 28110227 | 3L | 20397189..20397478 | 1121..835 | 825 | 91.1 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:48:57 has no hits.
FMO07781.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:17:38 Download gff for
FMO07781.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| trbl-RA | 345..1446 | 1..1097 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:09:53 Download gff for
FMO07781.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| trbl-RA | 346..1447 | 1..1097 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:26:52 Download gff for
FMO07781.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| trbl-RA | 346..1447 | 1..1097 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:26:52 Download gff for
FMO07781.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20397213..20397475 | 838..1097 | 92 | <- | Minus |
| 3L | 20400426..20401260 | 1..837 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:09:53 Download gff for
FMO07781.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20390313..20390575 | 838..1097 | 92 | <- | Minus |
| arm_3L | 20393526..20394360 | 1..837 | 99 | | Minus |
