FMO07785.5prime Sequence
1131 bp (974 high quality bases) assembled on 2008-11-06
> FMO07785.5prime
CAGTCGACATGGTGAAAGGAACTCTGTACACTTACCCCGAGAACTTCCGG
GCCTACAAGGCGCTCATCGCAGCCCAGTACTCCGGAGCCCAGGTGAAAGT
GGCCGACAACTTCAAGTTCGGCGAGACCAACAAGTCGGCTGAGTTCCTCA
AGAAGTTCCCCGGTGGCAAGGTACCCGCCTTTGAGACCGCCGAAGGACAG
TACTTGAGCGAGTCCAATGCCATCGCCTACCTGCTGGCCAACGAGCAGCT
GCGCGGCGGAAAGTGCCCCTTCGTGCAGGCCCAGGTCCAGCAGTGGATCT
CCTTCGCCGACAACGAGATTGTGCCTGCCTCCTGTGCCTGGGTCTTCCCC
CTGCTGGGCATTCTGCCGCAGCAGAAGAACAGCACTGCCAAGCAAGAGGC
CGAGGCTGTGCTGCAGCAGCTCAACCAGAAGCTGCAGGACGCCACCTTCC
TGGCCGGCGAGAGGATCACATTGGCCGACATTGTGGTCTTCAGCAGTCTG
CTCCACCTGGACGAGTACGTCCTGGAGCCCAGTGTGCGCAGTGCCTTCGG
CAACGTGAACCGCTGGTTCGTCACCATCCTCAACCAGAAGCAGGTCCAGG
CCGTCGTCAAGGACTACAAGCTGTGCGAGAAGGCCCTGGTCTTCGACCCC
AAGAAGTACGCCGAGTTCCAGGCCAAGACCGGAGCCGCCAAGCCCCAGCA
GCAGGCTCAGCAGCAGAAGCAGGAGAAGAAGCCCAAGGAAAAGAAGGAGG
CGCCCAAGAATGCTGCCGAGCCCGCCGAGGAGTTTGGACGCCGCCTATGA
GGCCCTGGCCGCCGAGCCCAAGTCCAAGGACCCCTTTCGATGCGCTGCCA
AAGGGCACTTTCAACTTCGATGACTTCAAGCGCGTTGTACTCCACGAGGA
CGAGGCCAAGTCCATTCCTACTTCTTCGATAGTTCGATGCCGAGACTACT
CGTTCTGGTTTGGCGAGTACAAATACACGAGGAGCTGTCCAAGTGTTCAT
GTCGTGCCATCTCATCACCGTGCATGTTCCAGCGTCTGACAAGATGCCAG
GCGTCTTCGCCTTCGTTTGCCTGTTTCGGGAAGGACGGCAACGACATCCT
CGGTATCTGGGGTGGGGCCGGAACTGATCTG
FMO07785.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:35:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ef1gamma-RC | 1689 | CG11901-RC | 60..1171 | 8..1111 | 4925 | 97.1 | Plus |
| Ef1gamma-RA | 1662 | CG11901-RA | 33..1144 | 8..1111 | 4925 | 97.1 | Plus |
| Ef1gamma-RB | 1685 | CG11901-RB | 56..1167 | 8..1111 | 4925 | 97.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:35:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29220641..29221512 | 169..1038 | 3760 | 97.9 | Plus |
| 3R | 32079331 | 3R | 29220430..29220581 | 21..172 | 760 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:35:42 has no hits.
FMO07785.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:17:35 Download gff for
FMO07785.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ef1gamma-RA | 79..1177 | 1..1092 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:05:26 Download gff for
FMO07785.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ef1gamma-RA | 24..1122 | 1..1092 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:19:19 Download gff for
FMO07785.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ef1gamma-RB | 47..1145 | 1..1092 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:19:19 Download gff for
FMO07785.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29220430..29220579 | 21..170 | 100 | -> | Plus |
| 3R | 29220643..29221569 | 171..1092 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:05:26 Download gff for
FMO07785.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25046152..25046301 | 21..170 | 100 | -> | Plus |
| arm_3R | 25046365..25047291 | 171..1092 | 97 | | Plus |
