FMO07791.5prime Sequence
1147 bp (1026 high quality bases) assembled on 2008-11-06
> FMO07791.5prime
CAGTCGACATGCCGGCGGCGAAGTGCGGTTGTTTGAAGAAGGAGGCTCGC
GTCCATGTCATCTACGTGGGTGGAACCATCGGAATGATCCGCAACGAGTC
CGGAGTACTGCACACCGCGCCCAAGGTGCTGGCTCGGCAGCTTCAAGAGT
TTCCCAGCTGCCACGACAGGAATTACACCAGCAAGGATAATGATGGTCCC
ATGATGGTGCTACCCGCAGTGTCTGGAGCTCCGTATAGAGTCCTTTACGA
TTTGATTGAGTTCTGCCCACTGATGGACTCCAGCTGCATGGGCTTCTGCG
ACTGGAAGCGCATTGCCAACGAAGTGGGAAAGACATACAAGTCCTACGAC
GGCTTTGTGATCCTCCATGGAACGGATACCCTAGCCTACTCCGCCTCGGC
ACTAGCGTTCATGCTTGAGAGCCTGAACAAGCCCGTGGTATTCACTGGGG
CACAGATTCCGATCTTTGAAGCCCGCAGCGATGGGCGGGAGAACTTCTTG
GGCGCACTTCTCATAGCAGGAAATTACAGTATACCCGAAGTGCTGGTCTT
CTTCGGCAACAAGATTCTACGTGGCTGTCGCTCCACGAAGCTCAATTCTG
ACTCTTTTCACGCACTGGACTCACCAAATTTTGCACCATTGGGTCGGGCG
AGTGTCAACATTGAGATCAACAGCCGCCAAATCTTCCGACCGTGCAATAT
TAAACCATTTTCACTTCATTCGGAACTCGAAAAGAACGTGGCGCTGCTGC
GTATTTACCCGGGAATAAGTGCCAGTGTGGTGCAGGCAATCCTGAAAGAG
CCAACGAAAGGTGTTGTCCTCCAGACCTTTGGGGCCGGCAATTTTCCGGT
TAATCGTGAGGACTTGCTGGACGAACTGAGGGAGGCGGTTCACAGAGGCG
TTATTATGTCAACATTACGCAGTGCTCGGCGGGCATGGTGGCCAACATTT
ACGAGACAAGCCAGGGTCTGATGGAAGTGGGCGTAATACCCGGCTACGAT
ATGACTCAGGAGCAGCTTTACAACTGGCTATGTGCTGTCAAGCCGGAATG
GTACATCCACAAGAAGAAGGTGATGCTCCTAAGTTGCCGAAGCTGACACC
AATAGTGCAGAATTAACGACTGGATTGAATCAGGCCGTGCCCGCCAT
FMO07791.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:21:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8526-RA | 2069 | CG8526-RA | 201..1287 | 9..1085 | 5160 | 98.8 | Plus |
| CG8526-RB | 2066 | CG8526-RB | 201..1284 | 9..1085 | 5105 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:21:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9801914..9802679 | 330..1085 | 3375 | 98.2 | Plus |
| 3R | 32079331 | 3R | 9801627..9801852 | 104..329 | 1130 | 100 | Plus |
| 3R | 32079331 | 3R | 9801480..9801576 | 9..105 | 485 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:21:57 has no hits.
FMO07791.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:17:27 Download gff for
FMO07791.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8526-RA | 143..1253 | 9..1104 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:29:51 Download gff for
FMO07791.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8526-RA | 201..1311 | 9..1104 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:07:41 Download gff for
FMO07791.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8526-RA | 201..1311 | 9..1104 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:07:41 Download gff for
FMO07791.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9801480..9801576 | 9..105 | 100 | -> | Plus |
| 3R | 9801629..9801852 | 106..329 | 100 | -> | Plus |
| 3R | 9801914..9802703 | 330..1104 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:29:51 Download gff for
FMO07791.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5627202..5627298 | 9..105 | 100 | -> | Plus |
| arm_3R | 5627351..5627574 | 106..329 | 100 | -> | Plus |
| arm_3R | 5627636..5628425 | 330..1104 | 97 | | Plus |
