FMO07795.5prime Sequence
1141 bp (1006 high quality bases) assembled on 2008-11-06
> FMO07795.5prime
CAGTCGACATGACTCGGGAATCGGCAGTCGCCACCAAAAGAAATTGGGCG
ATTCTGGCCGCAGGAGTTGGCTTGGTATACGTCCTGGTGCGGCACAGGCA
CCGACTGCTGTGTCCACTGCGTCGCGTCTGGTCCTTCGGCAGCCTGGTGC
CCCAGCGACGCATAGAAGTGATCAACTCCGTCCAGGATCCGACCACGCAA
TGGGTTTTGAATGAACTGAAGAATCACTGCCAGACTTTTAAAGTCCTTGG
ATTCGATTGCGAGTGGATCACCGTGGGCGGCAGCCGCAGGCCAGTGGCCT
TGCTCCAATTGAGCTCCCATCGGGGTCTATGTGCCTTATTCCGACTGTGC
CATATGAAACAAATACCCCAGGATCTGCGGGAGCTTCTCGAGGACGATTC
CGTGATCAAAGTGGGCGTGGCACCCCAGGAGGATGCCATGAAACTTTCGC
ACGACTATGGAGTAGGCGTGGCCAGCACACTGGATCTGCGCTTCCTCTGC
GTAATGGCAGGCCACAAACCTGAGGGACTGGGAAAGCTCTCCAAAACTCA
CCTGAACTATACACTGGACAAGCACTGGCGCCTGGCCTGCTCCAACTGGG
AGGCCAAGACTTTGGAGCCAAAACAGCTTGATTACGCTGCCAACGACGCA
CTTATGGCGGTGGCCATTTATCAAAAATTGTGCAGGGATCTGCAGCCAAA
ACACTTTTGGCAACGAAGGCAACTGGACGACAATAGCATGCACAACAAAT
TCGAACCCTTTCTCGACGTGGACTTCACGAAAGGCTTCACACTCAACCCG
TTCCGGCAGCGGAGTAACTCGTTCAAAGGGCCTCCACCCAATCCAAAAGC
AATAAATGGGTGCCCAAGAAGCACCGTACGGCAAATAGCTACCCGAACCA
AGACTTCTACGATACTGCCTGCTGCAGCGCCCGATGGCGAACTCCTGTGT
ACAATTGACAGGCGCCAGGCGTTCCTGGTATCTCATCAATTCTGGGCACG
CATTATAGCGAAGAGCCTTTCACTGTCCGCCTTAACTTCTAGCCAGCCGG
TCCAGCGTCGGAATGTGGGGCGGCTTCTATCAACAATCAGAAACCCGTGC
TGGGGTGGGTGGTGACCGGGATGCGTACATTCCGGAAAACT
FMO07795.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:19:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6744-RB | 1851 | CG6744-RB | 32..1163 | 9..1132 | 5065 | 97.5 | Plus |
| CG6744-RA | 1947 | CG6744-RA | 128..1259 | 9..1132 | 5065 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:19:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11434383..11435299 | 1132..224 | 3590 | 96.4 | Minus |
| 3R | 32079331 | 3R | 11435362..11435576 | 223..9 | 1075 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:19:45 has no hits.
FMO07795.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:17:37 Download gff for
FMO07795.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6744-RA | 128..1267 | 9..1141 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:28:42 Download gff for
FMO07795.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6744-RA | 128..1267 | 9..1141 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:06:40 Download gff for
FMO07795.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6744-RA | 128..1267 | 9..1141 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:06:40 Download gff for
FMO07795.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11434373..11435299 | 224..1141 | 96 | <- | Minus |
| 3R | 11435362..11435576 | 9..223 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:28:42 Download gff for
FMO07795.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7260095..7261021 | 224..1141 | 96 | <- | Minus |
| arm_3R | 7261084..7261298 | 9..223 | 100 | | Minus |
