FMO07804.5prime Sequence
1092 bp (874 high quality bases) assembled on 2009-08-11
> FMO07804.5prime
ACACAATATTAAACATCCGGGCTCACTCCTGGGCCGAGAAGGACAATTTG
GTATTTCCAACTATTACCAAGCCCGTTTCGAATGGCTGGTTCGCCTGGTC
GCCAATCGGGCAATTCAAACCAAATTCTCAAAAAGTGCCCTACGTCGTGG
TGCCGCCAAGCATCAAATTTCCCATTTCTCTTCGGTACAAAGATTCACCG
CCGAAGCTGGAAAAGAAGCCCAACATTTTTCTGGACAACATGCTCCAGTA
TATAGAATCTTCGTCGTACATGTACGTTATGGTAAGAAACAACCAGCAGG
CACAGCTAAATGCCAATATAGTGTGCACCAGCGAAGTCCTGGAGCTGATG
ATGTGTGCTCCCTACGAAAAGAAGACTGGATGGTCATTGGGTGTCACCCG
GTATCGCAACACAATGTACATTTGCCGCATTGATGTTGAACAACCCGACC
CCATTGATCAGGACAATCTGAAGAGGGCCATGCAAGAATTTTGGCTTACG
AATCTTCGAACCCATTGTGTTTTTTGAAAACGGCATTAAGATGCACCAGC
ACAATCAATCTTTCTGAAGAACATTTACGCTTTCATGGTGTATTTTCCTT
TGATTTTGAATGGTAATCGAGTTTCTATTTGATTCTCCAGTACTAGCCGA
GATGCCAAGCACAACATTGAATGGGTCTGCTCTAAACTGGGTAGACCTGC
AGATACGCCCTATGTTCATGAGTCGACTGGATTGGCCAGAGCACAATCGC
ACAGAGGCCCTTTAAGTGGTGGGTCAAGTGTTTTCTGTTGGGAATCGAAA
GCTTCTATATAGCCCGCCGCGATGAAAACGCCCATGTGTACAACAATAGA
AAGACTTTGGTGCGGGATTTATGGAAGCCTGCTAAATAAGATTGTCGCCC
ACATGTGCGCCACTTCAGGTTTACCTACTCATTGTATTTCCAAGTTATGC
GTCGATCGACTGCCAGCACGTTTACCTTTTCAGTCGACGCGAGCCAAGGA
CAGTATCAACAGGGCTATGCTAGGCGCATTCAGTAACCGTCTCGTTCGAC
TGGTTCGATGATGCTGGACGATTCACGACGAATTGGTAGACC
FMO07804.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:08:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cuff-RA | 1295 | CG13190-RA | 58..1142 | 1..1072 | 4520 | 95.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:08:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11886124..11886647 | 1..524 | 2590 | 99.6 | Plus |
| 2R | 25286936 | 2R | 11886920..11887127 | 669..877 | 905 | 96.7 | Plus |
| 2R | 25286936 | 2R | 11886706..11886851 | 521..669 | 580 | 97.3 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:08:12 has no hits.
FMO07804.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:26:32 Download gff for
FMO07804.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13190-RA | 58..1064 | 1..1000 | 96 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:39:40 Download gff for
FMO07804.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cuff-RA | 58..1064 | 1..1000 | 96 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:55:22 Download gff for
FMO07804.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cuff-RA | 58..1064 | 1..1000 | 96 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:55:22 Download gff for
FMO07804.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11886124..11886648 | 1..526 | 99 | -> | Plus |
| 2R | 11886712..11886850 | 527..668 | 97 | -> | Plus |
| 2R | 11886920..11887137 | 669..884 | 95 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:39:40 Download gff for
FMO07804.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7773629..7774153 | 1..526 | 99 | -> | Plus |
| arm_2R | 7774217..7774355 | 527..668 | 97 | -> | Plus |
| arm_2R | 7774425..7774642 | 669..884 | 95 | -> | Plus |
