FMO07810.5prime Sequence
1040 bp (964 high quality bases) assembled on 2009-08-11
> FMO07810.5prime
CAGTCGACATGATGAAGCGACAGAATGTCCGTACCCTTTCCCTGGTGGTA
TGCACTTTCACCTATCTTTTAATTGGAGCCGCCGTGTTCGATTCCCTGGA
GTCACCAACGGAGGCCAAAAGATGGGAATTCCTACAGACCGTTAAGAACA
ACTTTGTTAGAAAGTACAATGTGACTGACGAGGATTTCCGTGTGATGGAA
ATCGTCATCATTGAAAATAAGCCCCACAAGGCCGGACCTCAGTGGAAATT
CGCTGGAGCTTTCTATTTCAGCACGGTTGTACTGGCAATGATAGGATATG
GTCATTCTACGCCAGTTACAATTCCGGGAAAAGCATTTTGTATGGGCTAT
GCTATGGTGGGCATCCCGCTGGGTCTGGTGATGTTCCAGTCTATCGGAGA
ACGTCTGAATAAGTTTGCATCCGTGATAATAAGGCGGGCAAAGAGAGCCA
GTGGAGCTCGCTGTACGGATGCCACCGAAATGAATCTCATGTTGGCCACC
GGAATGCTCTCCTCCATAATAATCACCACTGGAGCAGCAGTCTTTTCCCG
ATACGAGGGTTGGAGCTACTTCGATAGCTTCTACTATTGTTTTGTCACCT
TGACGACAATTGGTTTCGGCGATTATGTGGCATTGCAGAACGACCAAGCT
CTAACTAATAAGCCTGGCTATGTGGCGCTGAGCTTGGTCTTCATCCTATT
CGGCTTGGCCGTGGTGGCCGCCAGTATCAATCTATTGGTGCTCCGATTCA
TGACCATGCAAGCAGAGGATGCCAAGAGAGATGAGCAGGATGCTCAGAAC
TTGGCTGGAAATGCCCAGCCGGTGACCTTCGATGATGAGTCCACGTACAA
TATGCACGGCAAGCTGCTGGAGAACAACTACACAACCGGAAACGATGAGA
CCGCCTCCCTGTGTTCCTGCACCTGCATGGGTGGCACAGGTGCCTGAATC
ATGAGCAGTTCGTGGACCTCGACTTTCAACTACGACATTATCGTATAGCA
CTTGGTGCCTGAGCGAGCCTCGACTGCAGCCTTCTAGACA
FMO07810.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:56:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Task7-RA | 1727 | CG9361-RA | 277..1292 | 9..1021 | 4825 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:56:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9411085..9411487 | 758..356 | 2015 | 100 | Minus |
| 3R | 32079331 | 3R | 9410809..9411030 | 978..758 | 985 | 97.3 | Minus |
| 3R | 32079331 | 3R | 9411668..9411824 | 295..139 | 785 | 100 | Minus |
| 3R | 32079331 | 3R | 9411888..9412017 | 138..9 | 650 | 100 | Minus |
| 3R | 32079331 | 3R | 9411539..9411605 | 358..292 | 335 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:56:15 has no hits.
FMO07810.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:26:36 Download gff for
FMO07810.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Task7-RA | 1..988 | 9..993 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:27:09 Download gff for
FMO07810.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Task7-RA | 269..1264 | 1..993 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:42:12 Download gff for
FMO07810.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Task7-RA | 269..1264 | 1..993 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:42:12 Download gff for
FMO07810.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9411086..9411486 | 357..757 | 100 | <- | Minus |
| 3R | 9411541..9411602 | 295..356 | 100 | <- | Minus |
| 3R | 9411669..9411824 | 139..294 | 100 | <- | Minus |
| 3R | 9411888..9412024 | 1..138 | 97 | | Minus |
| 3R | 9410792..9411030 | 758..993 | 96 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:27:09 Download gff for
FMO07810.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5236514..5236752 | 758..993 | 96 | <- | Minus |
| arm_3R | 5236808..5237208 | 357..757 | 100 | <- | Minus |
| arm_3R | 5237263..5237324 | 295..356 | 100 | <- | Minus |
| arm_3R | 5237391..5237546 | 139..294 | 100 | <- | Minus |
| arm_3R | 5237610..5237746 | 1..138 | 97 | | Minus |
