FMO07811.5prime Sequence
1099 bp (989 high quality bases) assembled on 2009-08-11
> FMO07811.5prime
CAGTCGACATGCGATTGTTTGGAGCTAGCTTATTTGTTCTCAAAGCGATT
ATTTGGCTTCCCATTGCCGTTTATGTTCCCGCTTTGACCTTCAATCAAGT
GTCCGGAATTGGTATTCATATCATCACTCCAATAGTGGTCATCATTTGTA
CTTTCTACACCTGCGTGGGCGGAATTAAGGGCGTGGTCTACACAGATGTG
GTTCAGAGCGTTATTATGTATGGATCCTTGATTGTGATCATGATCAAGGG
AACCTTGGATTTAGGTGGATTTGGAACTGTGTGGAGGATTAATCAAGAGG
GCGGACGCCTAAATACCCCGGAATGGAGTTTGGATCCCACAGTTCGACTG
AGTGTTTTCTCCGTGTTTGTTGGTGGAACTTTCTTTAAGTTGCAAAGCAC
CTCGATCAACCAGGCAACAGTTCAACGTTTTATGTCCTTGCCATCCCTGA
AAGCCATCAAACAGACCCTCTTCACATTCTCCATTGGACTGGTACTGCTC
TACATGGGATGCGTCTATGTGGGATTGGTGTGCTATGCCACCTATTATGA
TTGCGATCCCATGTCTACAGGACTTGCAGGACGTCGGGACCAGCTGGTTC
CCCTGCTAGTGATGCGGGTGCTGGGGGTTGTGCCTGGTCTGCCAGGACTC
TTTGTCTCAGCTGTGTTTAGCGCGGCCTTGAGCTCGTTATCCACCCTCCT
CAACTCTCTGGCCGCTGTTATCCTGGAGGACTTTGTTAGGCCGCGCATGG
GAAAATCGATGAAGGAGAACCACGTGGCTCTGACCATGCGAGTGGTGGTG
GTAACCTTTGGCATAAGCTCAATTTTTATGGTCTACGTGGTTGAAAGCTG
GGCATGGTACTGCAATTGTCGGCGACACTTCAGTCAGTTTATATGGACCG
ATGTTGGGCATTTTCACGGTGGGAATGCTAATGCCATGGGTGGGCGAAAG
TGCGTTTTCATAGCAGCGTTGCCTCTTTTTGACATGGCCTGATAGCGTAA
TGCTCAATGCCACATAACAGTTCTCGAACCACAGCTGCAGCCTGGACATT
GTGGACTATGATTTCGATATGAATCGTACTACTCCACTTTAATCGACCT
FMO07811.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:54:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42235-RE | 2500 | CG42235-RE | 942..2051 | 9..1091 | 4880 | 97.2 | Plus |
| CG42235-RC | 2328 | CG42235-RC | 987..1160 | 54..227 | 240 | 75.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:54:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25919935..25920313 | 573..949 | 1795 | 99.5 | Plus |
| 3R | 32079331 | 3R | 25919298..25919573 | 47..322 | 1380 | 100 | Plus |
| 3R | 32079331 | 3R | 25919630..25919879 | 323..572 | 1250 | 100 | Plus |
| 3R | 32079331 | 3R | 25919202..25919240 | 9..47 | 195 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:54:03 has no hits.
FMO07811.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:26:35 Download gff for
FMO07811.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42235-RE | 927..1891 | 1..963 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:54:42 Download gff for
FMO07811.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42235-RE | 927..1891 | 1..963 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:32:21 Download gff for
FMO07811.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42235-RE | 935..1899 | 1..963 | 99 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:32:21 Download gff for
FMO07811.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25920372..25920397 | 951..975 | 96 | == | Plus |
| 3R | 25919195..25919240 | 1..47 | 93 | -> | Plus |
| 3R | 25919299..25919573 | 48..322 | 100 | -> | Plus |
| 3R | 25919630..25919879 | 323..572 | 100 | -> | Plus |
| 3R | 25919935..25920315 | 573..950 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:54:42 Download gff for
FMO07811.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21746094..21746119 | 951..975 | 96 | == | Plus |
| arm_3R | 21744917..21744962 | 1..47 | 93 | -> | Plus |
| arm_3R | 21745021..21745295 | 48..322 | 100 | -> | Plus |
| arm_3R | 21745352..21745601 | 323..572 | 100 | -> | Plus |
| arm_3R | 21745657..21746037 | 573..950 | 99 | -> | Plus |
