FMO07815.5prime Sequence
1159 bp (1028 high quality bases) assembled on 2009-08-11
> FMO07815.5prime
CAGTCGACATGGCTTCATCCACAGGTCTCCTGGTGGTGTCCAACATCAAG
CACCTTGGCAAATCCCTGCGAGCCATCGAGAAGTACGTGAATTCACTGTA
CATCCACCTAAATGTGGCGGGGTCAACGTCCACGACGTCACCAGTTCCAC
CGCCTCCGGTTTGGGGTCGTCTAATCTCGCAGCTGTACGCCAACAGCAGC
AGCTATGTGGGCAAGCAGTTGGACCTTCGCGTCCTTGTCTCTCCCCTACG
ACCAGGTGCCAATGGATCCCTGAAGTTGCGCCAGCCCGTCGACCTAATCT
TCTCGGATGCACATCATCCGGAGCTGTGCGACAGGCTTCGCGCGGATCTT
AACATCAGCAAGCCAACAATCTTCCTGGATGACTCGGTCATCTCGGATTT
AAGTGCCCAGCAGGATGACACCCAGCCGCCTAAGGTGTATCCCTCGGTTG
TCCTGGGCGGAACATTCGATCGCATCCATCTGGGACACAAGATATTCCTC
ACCCAGGCTGTACTGCGCACCTGCAAGCGTTTGGTTGTGGGCGTAACCAC
CTCCGCCATGACGAAGGGAAAGACGCTGCCGGACTTGATTTTGCCCGTGG
AAGAGCGCATCGCCCGGCTAAGGGAGTTCCTGGTGGACATAGATGATACG
CTGCAGTACGAAATTGTGCCCATCGATGATCCCTTTGGTCCCACGCAAGT
GGATCCTGACCTGGACATGATTGTGGTCAGTGCGGAGACGTTGCGAGGAG
GGCAGATGTCAACGAGGTACGCTCCGCTAAGCAACTGCGCGAGCTGGAGA
TCTTTGTGATTGACATTGTTGAAAGCAACGTGCATGATGGCATCCACGAG
ACCAAGTCAGCTCGAGTAACACACGCATCGATCTGCTGGGAACCCGCTGG
AGAAGCCGGAGCCACGACAAAGCTCCCGCCGCGCCCTTACATTATTGGAC
TCACTGGCGGCATCGCATCTGGCAAGAGCAAGATGGGCGAAAGATTGGCC
AACATGGGCGCCCACGTGATCGACTGCGATAAGGTGCGCCACGAAGTTTA
CCAACCTGGTCAGTTGTGCTACACCCGAATTGTGGCAGCACACTTCGGAC
AGGAATGTTCGACAATGGTGCCATCGATCGGTCCAAGCTGACTGTGTTGC
CGATCCAAG
FMO07815.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:32:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ppat-Dpck-RA | 1711 | CG10575-RA | 36..1172 | 9..1140 | 5265 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:32:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 5768193..5768759 | 575..9 | 2820 | 99.8 | Minus |
| 3L | 28110227 | 3L | 5767613..5768134 | 1084..567 | 2290 | 97.7 | Minus |
Blast to na_te.dros performed 2014-11-28 21:32:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rt1a | 5108 | Rt1a DME278684 5108bp Derived from AJ278684 (AJ278684.1) (Rel. 64, Last updated, Version 1). | 1020..1067 | 871..918 | 114 | 70.8 | Plus |
FMO07815.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:37:27 Download gff for
FMO07815.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10575-RA | 1..1137 | 9..1140 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:36:36 Download gff for
FMO07815.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ppat-Dpck-RA | 28..1172 | 1..1140 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:25:55 Download gff for
FMO07815.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ppat-Dpck-RA | 28..1172 | 1..1140 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:25:55 Download gff for
FMO07815.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 5767556..5768133 | 568..1140 | 96 | <- | Minus |
| 3L | 5768201..5768763 | 1..567 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:36:36 Download gff for
FMO07815.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 5760656..5761233 | 568..1140 | 96 | <- | Minus |
| arm_3L | 5761301..5761863 | 1..567 | 99 | | Minus |
