FMO07816.5prime Sequence
1147 bp (1054 high quality bases) assembled on 2009-08-11
> FMO07816.5prime
CAGTCGACATGCGCCTACGATATTGCTGGCTGACTCTCTCCCTTTGCCTG
CTTCTGCAACACGATCGTGCCCAGGCTGCCAACATCCTGGGTATATTTCC
CTACCGCCACATTTCACCCTTTTTTGTGATGCAGCCTTTGGTGCGGACTT
TGGCAACGAGAGGGCACAATGTGACTCTAATTACACCGATCGGAATGCCA
AACGATATCGAGGGAGTTCGACATATACGTGTTGCCCAGCTTAACGAACG
TATAAAAGAAATGCTTGAGTCTGACCAAGTTCTGGACTTTATGATTAACA
AATGGACGGAGAGCGCTCTTACGGCAAAGGCGCTCTTTAATGCCTCCAAT
GACATTCTAAGTGATCCTGGCGTTCAAAGGATGCTGCATGACAAAAGCGA
AAGTTTTGACTTGATCATCATGGAACCATCTAGTCTGGACGCCCTTTATG
GCCTGGTTGAGTTCTACAACGCCACGCTGATGGGATTGTCCAGTATACGG
ATTAACTGGCACACATACGAATTGGCAGGAAATCCAGCTCCATCAATATA
CGAACCCATTTCTCCGGTCGGCTTTTCCTTGGAAACATCATTGTTCAGTC
GCGTATATAACTGGATTCATATAATGGAAGAAAAATTGGTGAACTATTTG
ATCTTACGACCTGCTCAACTACACTTATTTCAGAAATTTTTTGGCTATTC
CGCTCAGAAAATGAATGAGTTAAGATCCAGATTCTCGTTGATGCTAATCA
ATAGCCACTACAGCATGGGTAAAGTTCGAGCCAATGCACCAAACATAATC
GAGGTGGGAGGTCTTCATCTCAGCGAGCCCCCTGAACCAAGTGATGAGGA
GCTGCAGAAATTTCTGGACAAGGCCGATCACGGAGTTATTTACTTCTCGA
TGGGCAACGACATTCTGATTAAGTTTCTTCCTGAAAACATTCAGAGCTAC
TGCTGCAGACTTTTGCTACGCTAAATGAAAGTATTATTTGGAAGAGCGAA
CTATTATATATGCCTGACAAATCGGATAATGTATATGTTTGTTGAACAAG
CCCCTCCACGAAATAAATTGAACCATCCCAATGGTCCGACTTTTTCATCA
CACGGGGATACTGAAGGTGATTGAGGGCCGTAAACATGGGTCATGCT
FMO07816.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:11:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16732-RA | 1758 | CG16732-RA | 26..1154 | 9..1136 | 5330 | 98.5 | Plus |
| CG16732-RB | 1749 | CG16732-RB | 26..1145 | 9..1136 | 5185 | 97.7 | Plus |
| CG10168-RA | 1856 | CG10168-RA | 912..1130 | 727..945 | 330 | 76.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:11:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 23535548..23536384 | 1094..257 | 3970 | 99 | Minus |
| 3R | 32079331 | 3R | 23536436..23536685 | 258..9 | 1250 | 100 | Minus |
| 3R | 32079331 | 3R | 23537719..23537937 | 945..727 | 330 | 76.7 | Minus |
| 3R | 32079331 | 3R | 23533757..23533913 | 904..748 | 185 | 74.5 | Minus |
Blast to na_te.dros performed 2014-11-28 20:11:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 1360 | 3409 | 1360 1360 3409bp | 949..988 | 240..279 | 119 | 77.5 | Plus |
FMO07816.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:37:29 Download gff for
FMO07816.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16732-RA | 1..1108 | 9..1114 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:29:42 Download gff for
FMO07816.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16732-RA | 18..1133 | 1..1114 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:51:59 Download gff for
FMO07816.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16732-RA | 18..1133 | 1..1114 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:51:59 Download gff for
FMO07816.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 23535539..23536382 | 259..1105 | 98 | <- | Minus |
| 3R | 23536436..23536692 | 1..258 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:29:42 Download gff for
FMO07816.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 19361261..19362104 | 259..1105 | 98 | <- | Minus |
| arm_3R | 19362158..19362414 | 1..258 | 98 | | Minus |
