FMO07817.5prime Sequence
1165 bp (1065 high quality bases) assembled on 2009-08-11
> FMO07817.5prime
CAGTCGACATGTCTGAGGCCACCACCAATGGACACAATGAGGTGCCAGCC
AATAATCTTCCATCTTGGCTGTCGAAAATCTCTCTGGAGAAGGCTGTTCA
GGCCCAGATCGGAGACTTTGAGAAAATCATCTCGGTAATCCCACAAAAGG
GCAGCAGTGATGGCGATAATTATTCTACACAGTTCCTTCGTTTGCTGGTG
GAAGTGGAACTGATTGACCACAGCACCAAGGATCTTTCCTTCGTTCTGAA
GGCACAGCACAGCAACGAAATGATGGCCGCCATATTGGCCAAGTTGAAGC
TCTTCCAAAAGGAGGAACAGATGTACCATAGCATTCTGCCCAAATTCGAG
AAGCTTTACGCGGATGCCGGCAAACCCATTCAGTTCGCGCCCAAAGCCTT
CAAGTTCGATCGTGACCTCGGAGTGGACTACATTCTGCTTGAGGACCTAC
ATCGCAAGAACTTCAAAAACGCCAATCGCCTGGCCGGTCTGGATCTCGAT
CACATGCATAAGGTTCTCGAGAAACTGGCCGCCTTCCATGCGGCATCCGC
CTGCTACGTGGAGCACCACGGTCTCTTTGGCGAGGAGTTCACCGTTGGCG
TTTTCAGCGAGTCCAATCGCCAGCTTCTTCAGGAGTTCAATGCATCTGGT
GCATTTCTGGCTCAGCTCAAGAAGTGGAAGAATGCGCAGAAAATTTATGA
AAAGCTGGCTGACAGCGATGACTACTTGGTGGATCGTCTGCTGCAGGATC
AGCAATACAATACCAGAGAATTCAACGTGCTCAACCATGGAGACTGCTGG
GCCAATAATGTGATGTACCAACATGATGCATTTTGGAACTATTAAGGAGA
CCCTTTTCGTTGACTTTCAAGTGGGAAAATACGGAAGTCCGGCCCATGAT
CTGTACTACTTAATATTGTCATCGGCTGCTTCAGAGCTGAAGACTGCCAG
TTTGACTACTTGGTGCGCTACTATTTTGATAATCTTATGAAAATCTAAAG
CTTTCTGCAATACCACCGACCACTGCCCAAGTTGAAGAACCTGCATGCTT
CCCTTTCGCAACGGTTTGCTGCTTATATGGTGGTCTCAAGTTTGCCCGTC
GTCATGCTGACAGACGCCGATGCTTATCTGAAGCTATTAAGTGACAGTCA
AATGAAACCTGTCAC
FMO07817.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:15:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31087-RB | 1458 | CG31087-RB | 93..1256 | 8..1156 | 5325 | 98 | Plus |
| CG31087-RA | 1445 | CG31087-RA | 80..1243 | 8..1156 | 5325 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:15:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25311883..25312375 | 708..216 | 2465 | 100 | Minus |
| 3R | 32079331 | 3R | 25312446..25312654 | 216..8 | 1045 | 100 | Minus |
| 3R | 32079331 | 3R | 25311639..25311823 | 892..707 | 880 | 99.5 | Minus |
| 3R | 32079331 | 3R | 25311390..25311570 | 1068..891 | 650 | 95.6 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:15:01 has no hits.
FMO07817.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:37:30 Download gff for
FMO07817.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31087-RA | 73..1211 | 1..1130 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:56:18 Download gff for
FMO07817.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31087-RA | 73..1211 | 1..1130 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:53:52 Download gff for
FMO07817.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31087-RA | 73..1211 | 1..1130 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:53:52 Download gff for
FMO07817.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25311884..25312374 | 217..707 | 100 | <- | Minus |
| 3R | 25311386..25311569 | 892..1071 | 95 | <- | Minus |
| 3R | 25311640..25311822 | 708..891 | 99 | <- | Minus |
| 3R | 25312446..25312657 | 1..216 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:56:18 Download gff for
FMO07817.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21138168..21138379 | 1..216 | 98 | | Minus |
| arm_3R | 21137108..21137291 | 892..1071 | 95 | <- | Minus |
| arm_3R | 21137362..21137544 | 708..891 | 99 | <- | Minus |
| arm_3R | 21137606..21138096 | 217..707 | 100 | <- | Minus |
