FMO07825.5prime Sequence
1055 bp (-78 high quality bases) assembled on 2009-08-11
> FMO07825.5prime
CAGTCGACATGGGAAAAGGCGTTAACACAGTCTTTAGGCCAGCAGAATGG
GACAATTCGGAGGAGAAGGAAAGACCCAAGTTGGAGTACTTGGTGACCAA
CAAGAAGACTCCGCCGGTTGAACTCTACCTCACGGCATTCGCCTCCGCCT
GCAGTGCCGAGATTGTGGGCTATCCCTTCGATATGTGCAAGACCCGAATG
CAGATCCAGGGCGAGATCGCGAGCAGGGTGGGTCAGAAGGCCAAGTACCG
AGGTCTGCTGGCCACTGCCATGGGCATCGTCAGGGAGGAGGGTCTGCTGA
AGCTCTACGGTGGCATATCCGCCATGCTGTTCCGCCACTCGCTCTTCAGT
GGCATCAAAATGCTGACCTACGACTATATGCGTGAGAAGATGATCGTGCC
CGACGAGGACGGCAGGCCGCAGCTATCCTTCCTGGGATCCTGCATCAGTG
GCGTCTTAGCCGGCGCAACTGCCAGCGTACTAACGAATCCCACCGAGCTG
ATTAAGATCCAAATGCAAATGGAGGGACAGCGGCGTCTAAGGGGCGAGCC
TCCACGCATTCACAATGTGCTCCAGGCCCTGACTTCCATTTACAGAACGG
GTGGTGTGGTGGGTCTCTGGAAGGGAACTGTTCCAAACACATGGCGCTCG
GCACTCGTGACCATAGGGGACGTCAGCTGCTATGACTTTTGCAAACGCTT
TCTGATTGCCGAGTTCGATCTGGTGGGATAACCGAGAAGTGCAGTTCGTA
GCCGCCATGACCGCCGGCGTAGCGGATGCCATTCTGAGCTTGCCAGCGGA
CGTGGTCAAGTCCCGGATCATGAATCAGCCAACCGATGAGCAAGGACGCG
GCATTCATTACAAGGGCTCCCTGGATTGCTTAGTAGGTGGTTAGAGAGAG
GCTTTTTGGCCATGACAGGAATCATTCCATATGAATGCTTGTCGGACCTG
CCTCCGTGTGTTCTGATGACCTTCAAGCAAATAAACGTTTCGTGCACGAG
TACGCAGCTTCCAGACCATCCGTGGCCCCGCCGACCAAGTATGCCAACCA
TAACC
FMO07825.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:32:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ucp4B-RA | 1098 | CG18340-RA | 44..1040 | 9..994 | 4570 | 98 | Plus |
| Ucp4B-RC | 1088 | CG18340-RC | 44..1030 | 9..994 | 4410 | 97 | Plus |
| Ucp4B-RB | 793 | CG18340-RB | 44..702 | 9..667 | 3295 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:32:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 5969902..5970560 | 9..667 | 3295 | 100 | Plus |
| 2L | 23513712 | 2L | 5970627..5970927 | 665..958 | 1060 | 94.7 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:32:29 has no hits.
FMO07825.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:37:40 Download gff for
FMO07825.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ucp4B-RA | 20..1008 | 9..987 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:32:08 Download gff for
FMO07825.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ucp4B-RA | 44..1032 | 9..987 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:19:04 Download gff for
FMO07825.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ucp4B-RA | 44..1032 | 9..987 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:19:04 Download gff for
FMO07825.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 5969902..5970559 | 9..666 | 100 | -> | Plus |
| 2L | 5970629..5970947 | 667..977 | 94 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:32:08 Download gff for
FMO07825.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 5969902..5970559 | 9..666 | 100 | -> | Plus |
| arm_2L | 5970629..5970947 | 667..977 | 94 | -> | Plus |
