FMO07827.5prime Sequence
1139 bp (1035 high quality bases) assembled on 2009-08-11
> FMO07827.5prime
CAGTCGACATGCAGAGACTGCAATTCGCTCTGCTAGCGTCGCTGCTCCTG
CTGGTGCTGCTTCTTCCGGGGATTAGGAGCACTCCCATCGACCAGGACGT
CGACATTGTTCACTATCAGCCGGAGCAAGTGCATCTGTCCTTTGGAGAAC
GCACCGATAGCGAGATAGTCGTCACTTGGTCCACGCGCAGCCTGCCGCCG
GATCAGGAAGTGGGTGCGGTCAGCGTGGTGGAGTACGGTCAACTGGTAGA
CGGACAGGTCAGGCTCACCCAACAGGCCCGGGGAAAGGCTACTAAATTCG
TGGACGGCGGTCACAAGCAGGCCACGCAGTTCATCCACAGGGTGACGCTT
AGGGACCTGGAGCCAAATGCCACATACTCTTACCATTGCGGTAGCGATTT
TGGCTGGTCGGCCATCTTCCAGTTTCGCACAGTGCCCTCGGCATCCGTTG
ACTGGTCGCCATCGCTGGCTATCTACGGGGATATGGGCAATGAGAATGCC
CAATCCCTGGCCCGATTGCAGCAGGAGACGCAGCGCGGCATGTACGATGC
CATCATCCATGTGGGTGACTTCGCCTACGACATGAACACGAAGAATGCTC
GCGTGGGGGATGAGTTTATGCGGCAGATCGAAACGGTGGCTGCCTACCTG
CCATACATGGTGGTTCCCGGCAATCACGAGGAGAAGTTCAACTTCTCGAA
CTATCGTGCCCGCTTCAGTATGCCGGGAGGTACGGAGAACATGTTCTACA
GCTTCGATCTGGGACCCGTGCACTTCGTGGGCATTAGCACGGAGGTCTAC
TACTTTCTCAACTATGGTTTAAAGCCGCTGGTATTCCAGTTCGAATGGTT
GCGTGAGGATCTGGCCAAGGCCAATCTGCCAGAGAATCGGAACAAGCGTC
CGTGGATCATCTTGTACGGTCATCGACCATGTACTGCAGCAACGAGAACG
ACAATGACTGCACCCACTCAGAGACTCTCACGCGGGTGGCTGGCCATTTG
TACACATGTTCGGATTGAGCGCTGCTTTACGAGTCGCGTGACGTGGCATT
TGGGCGCACGAGCCCTCCTTACGAGAGACCTCTGTCCATTACGAATACAA
GGGGGCCATGCACGCCTAAGATTCGCGTACATGAATCCC
FMO07827.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:44:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1637-RB | 2196 | CG1637-RB | 246..1347 | 9..1102 | 5175 | 98.6 | Plus |
| CG1637-RD | 2199 | CG1637-RD | 246..1350 | 9..1102 | 5135 | 98.4 | Plus |
| CG1637-RC | 1708 | CG1637-RC | 660..1153 | 453..945 | 1005 | 80.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:44:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 10875241..10875588 | 688..341 | 1740 | 100 | Minus |
| X | 23542271 | X | 10874840..10875170 | 1017..689 | 1555 | 99.4 | Minus |
| X | 23542271 | X | 10875801..10875998 | 343..146 | 990 | 100 | Minus |
| X | 23542271 | X | 10877415..10877553 | 147..9 | 695 | 100 | Minus |
| X | 23542271 | X | 10871530..10871764 | 687..453 | 560 | 82.6 | Minus |
| X | 23542271 | X | 10871208..10871465 | 945..689 | 430 | 78.7 | Minus |
| X | 23542271 | X | 10873137..10873374 | 687..450 | 320 | 75.6 | Minus |
| X | 23542271 | X | 10872783..10873030 | 960..714 | 260 | 74.6 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:44:41 has no hits.
FMO07827.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:37:43 Download gff for
FMO07827.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1637-RB | 247..1356 | 1..1102 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:40:53 Download gff for
FMO07827.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1637-RB | 238..1347 | 1..1102 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:13:33 Download gff for
FMO07827.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1637-RB | 238..1347 | 1..1102 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:13:33 Download gff for
FMO07827.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 10877415..10877561 | 1..147 | 97 | | Minus |
| X | 10875241..10875587 | 342..688 | 100 | <- | Minus |
| X | 10874749..10875170 | 689..1102 | 96 | <- | Minus |
| X | 10875803..10875996 | 148..341 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:40:53 Download gff for
FMO07827.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 10768782..10769203 | 689..1102 | 96 | <- | Minus |
| arm_X | 10769274..10769620 | 342..688 | 100 | <- | Minus |
| arm_X | 10769836..10770029 | 148..341 | 100 | <- | Minus |
| arm_X | 10771448..10771594 | 1..147 | 97 | | Minus |
