FMO07828.5prime Sequence
1082 bp (1042 high quality bases) assembled on 2009-08-11
> FMO07828.5prime
CAGTCGACATGACGGCCAAGATGAAGCTGCGGTCCCAGCTGCATCTGCTC
ACTGGTTTCATGGCTGGATTCGTGCTGGCCTTCGTGCTCCTCCTCTACGT
CTACGATGTCAGCAGGGTGACGCCCTGCTGGAGCAGCACCTCCACCATGA
CCACGGCCACAACGGCCAGGATTGAGGATGGTCCACCACCGCGCATTCTG
TGCATGGTGCTCACCTGTCCGGAGAACGTGCAGAGCCTGGCCAGAAGTGT
CTACGAGACCTGGGGCCAGCGCTGCAGCCGCCTGATCTTCGCCAGCAGCG
AGGACTACGAGCCACTGGGCGTGGTCGGTGTGGTGGAGCCAACTGGCGGT
GGCTACGAGGATCTGTGGAATAAAACGCGCGAGGGATTCCGACACGTTTG
GGAGCACTACGCTGGCGACTACGATTGGTTCCTCAAGGCAGATGACGATA
CGTACGTGGTCATGGAGAATCTGCAGCACCTGCTCCGTGGCTTCGATCCG
AATACGCCCGTCTTCTTTGGCTACAAGATGTCGCGATACAATGTGAGTTA
TATGTCTGGCGGAGCTTCGTATATTCTGAGTCGTGAGGCCCTACATCGAT
TTGCAACACAAGCCTATGAATCTGAGGTGATTTGTCCGCAGCCAAAAAAG
ATGGGCATCGAGGACTTTTACATGGGAATTTGTATGCAGAATGTGGGCGT
CCACTTTGTCGACTCCACACACGCTTTGGATGGAGACACGAAGCCGAAGT
TTATGCCCCTGGATCTGGAGAACTATATGTCGGATGCGAATTACACAATT
CCGGAGTGGCTGCGCCTCATGAGTCTATCTCGAGTTGAAACGGGCTTGGC
CTGCTGTTCCAACTACTCTGTGGCCTTTCATTATGCCAGTCGAGAACGGA
TGTTCCTCTACGAGTTTCTAATCTATCATCTGAAAGTATTTGATCCTACC
AGATTTCAGAACGCCGACACAGAGTCGATTAACTTTATCTGATTTACGAG
AGATTTCCACTGAGATACTCAATATAAAGACTTGCTGCCAATGTTCGAGA
CCTGATAATTTGCAAGCTTTCTAGACCATTCG
FMO07828.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:07:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3119-RA | 1193 | CG3119-RA | 46..1109 | 9..1061 | 5020 | 98.7 | Plus |
| CG3119-RB | 682 | CG3119-RB | 46..582 | 9..545 | 2685 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:07:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 2837344..2837788 | 453..9 | 2225 | 100 | Minus |
| 2L | 23513712 | 2L | 2835254..2835552 | 843..545 | 1495 | 100 | Minus |
| 2L | 23513712 | 2L | 2835045..2835201 | 996..842 | 670 | 98.1 | Minus |
| 2L | 23513712 | 2L | 2837193..2837286 | 545..452 | 470 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:07:41 has no hits.
FMO07828.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:37:44 Download gff for
FMO07828.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3119-RA | 36..1113 | 1..1069 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:39:28 Download gff for
FMO07828.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3119-RA | 38..1115 | 1..1069 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:59:44 Download gff for
FMO07828.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3119-RA | 38..1115 | 1..1069 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:59:44 Download gff for
FMO07828.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 2837346..2837796 | 1..451 | 99 | | Minus |
| 2L | 2837193..2837286 | 452..545 | 100 | <- | Minus |
| 2L | 2834965..2835200 | 843..1069 | 92 | <- | Minus |
| 2L | 2835255..2835551 | 546..842 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:39:28 Download gff for
FMO07828.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 2834965..2835200 | 843..1069 | 92 | <- | Minus |
| arm_2L | 2835255..2835551 | 546..842 | 100 | <- | Minus |
| arm_2L | 2837193..2837286 | 452..545 | 100 | <- | Minus |
| arm_2L | 2837346..2837796 | 1..451 | 99 | | Minus |
