Clone FMO07831 Report

Search the DGRC for FMO07831

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:78
Well:31
Vector:pMK33-CFH-BD
Associated Gene/TranscriptPten-RB
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO07831.5prime Sequence

978 bp (29 high quality bases) assembled on 2009-08-11

> FMO07831.5prime
CAATCCACATGGCCAACACTATTTCGTTAATGTCCAACGTGATACGCAAT
GTAGTGAGTAAAAAACGTATACGATACAAAGAAAAAGGATACGATTTGGA
TTTAACATACATTAATGATAACATAATTGCCATGGGCTATCCAGCACCGG
ATAAACTAGAGGGCCTATTCAGAAACCGTCTGGAAGATGTCTTTAAGCTA
TTGGAAGAGAATCATGCCCAGCATTACAAAATCTAAAACCTATGCTCGGA
GCGTAGTTACGACGTTGCTAAATTTCGCGGGAGAGTAGCTGTTTATCCGT
TCGATGATCATAACCCTCCAACGATTGAGTTAATACAACGATTTTGCAGT
GATGTTGATATGTGGCTCAAGGAAGATTCGTCCAATGTTGTAGCCGTGCA
CTGTAAAGCTGGAAAGGGCAGAACCGGTACCATGATCTGCGCATATTTAG
TGTTCAGTGGAATTAAAAAATCCGCCGACGAGGCATTAGCGTGGTATGAT
GAGAAGCGTACAAAGGACCGAAAAGGTGTGACAATCCCATCTCAACGTCG
ATATGTTCAGTATTTTTCCAAACTAGTATGTTCGAGTGTTCCATATTCGA
AAGTAAGCCTTAACGTATGTGAAATACGCTTCTCGGAGTCCAGTTGTGTG
CAAAACTTACGCATGGTATAATGTTCAATATCTGTATTACGCGACTCACC
CACAGATAATGCAAAGCCAGATAGACTGAAACCTTGCCGATTGATTTCAA
AAATCATTTGTTTTGACCATTAAACCATCTATACCAGTTTCCGGCGATGT
AAATTTGAACTCACAAAAAATCCCCAGATAAAATCATTTGTCACTTTTGG
CTAATACGTTTTTGTACGAAACTATTCACCTTGCGAGTCCGATGGAACGG
TTAAGAATATATACACACTTTAAGCTAAATCAGAAATCGATGATGTACAT
AAGGAAGTGACATAAATGATTTTCACAA

FMO07831.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:06:18
Subject Length Description Subject Range Query Range Score Percent Strand
Pten-RH 2467 CG5671-RH 755..1729 9..975 4420 97.5 Plus
Pten-RG 2617 CG5671-RG 912..1886 9..975 4420 97.5 Plus
Pten-RC 1803 CG5671-RC 413..1387 9..975 4420 97.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:06:16
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10258726..10258916 616..426 910 98.4 Minus
2L 23513712 2L 10259241..10259417 281..105 855 98.9 Minus
2L 23513712 2L 10259026..10259174 429..281 745 100 Minus
2L 23513712 2L 10258235..10258390 879..729 515 96.2 Minus
2L 23513712 2L 10259476..10259575 108..9 500 100 Minus
2L 23513712 2L 10258549..10258656 722..615 465 95.4 Minus
2L 23513712 2L 10258101..10258173 952..880 240 94.6 Minus
Blast to na_te.dros performed on 2014-11-28 19:06:17 has no hits.

FMO07831.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:38:01 Download gff for FMO07831.5prime
Subject Subject Range Query Range Percent Splice Strand
Pten-RB 605..1585 2..976 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:22:16 Download gff for FMO07831.5prime
Subject Subject Range Query Range Percent Splice Strand
Pten-RC 407..1387 2..976 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:39:46 Download gff for FMO07831.5prime
Subject Subject Range Query Range Percent Splice Strand
Pten-RC 407..1387 2..976 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:39:46 Download gff for FMO07831.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 10259029..10259173 282..426 100 <- Minus
2L 10259241..10259413 109..281 99 <- Minus
2L 10259476..10259578 2..108 96   Minus
2L 10258235..10258397 723..879 95 <- Minus
2L 10258549..10258656 615..722 95 <- Minus
2L 10258728..10258915 427..614 98 <- Minus
2L 10258075..10258173 880..976 91 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:22:16 Download gff for FMO07831.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10258549..10258656 615..722 95 <- Minus
arm_2L 10258235..10258397 723..879 95 <- Minus
arm_2L 10258728..10258915 427..614 98 <- Minus
arm_2L 10259029..10259173 282..426 100 <- Minus
arm_2L 10258075..10258173 880..976 91 <- Minus
arm_2L 10259241..10259413 109..281 99 <- Minus
arm_2L 10259476..10259578 2..108 96   Minus