FMO07835.5prime Sequence
1108 bp (1028 high quality bases) assembled on 2009-08-11
> FMO07835.5prime
CAGTCGACATGGCTGACGCCGCCCACCAGGAGTTCGCCCGCCGGCTGGCC
CTTTTCTCTATCAACGTGTACGGCAAGCTGTCGGGGCAGAAGCCCGGCGA
GAACATCGTCTTCTCGCCCTTTTCCATCCAGACTTGTGCGGCGATGGCCA
GGCTGGGTGCAGAAAACGAGACGGCTACCCAGCTGGACCAGGGACTGGGC
TTGGCCTCTAGTGACCCAGAGCAAATCGCACACAGTTTTCACCAGGTGCT
GGCCGCCTACCAGGACAGTCAGATCTTGCGCATCGCCAACAAGATTTTCG
TCATGGATGGCTACCAGCTGCGCCAGGAGTTTGATCAGCTGTTATCCAAG
CAGTTCCTCTCGGCGGCTCAGAGCGTGGACTTTTCCAAAAATGTACAAGC
AGCGGCCACCATCAACAATTGGGTTGAGCAGCGCACCAACCATCTGATCA
AGGACCTTGTGCCGGCTGATGTATTGAACTCCGAATCGCGACTCGTCCTT
GTGAACGCCATTCACTTCAAGGGCACCTGGCAGCACCAGTTCGCCAAACA
CTTAACCCGCCCAGACACCTTTCACCTGGATGGGGAGCGAACAGTTCAGG
TTCCGATGATGAGTTTAAAGGAGCGGTTCCGCTACGCCGATCTGCCGGCG
CTAGATGCCATGGCTCTGGAACTGCCCTACAAGGACTCAGACCTCTCTAT
GCTGATCGTACTGCCCAACACCAAGACGGGTCTGCCCGCTCTGGAGGAGA
AGTTGCGCCTCACGACCCTCTCGCAGATCACGCAGTCGTTGTACGAAACA
AAGGTAGCGCTCAAATTGCCCAGGTTCAAGGCAGAGTTCCAAGTGGAATT
GTCTGAGTTTTCCAGAAGCTGGGCATGTCAAGGATGTTCTCCGATCAGGC
TGAATTTGGAAAATGCTACAAAGTCCGGAGCCATTGAAAGTGTCAGCATC
ATACACAGTCTTCATTGAGTCACGAGGAGGGAACGAGCTGCGCGCACGGG
CATGGCGGTGCGTAGAGCCGCTATATGTCGCTGAGACATTGAGTCTTGCG
ACATCCTTTCACTATTGTTCTTTGTGCATAGAGATCTGGCATGTTTGGGA
TCTATTGC
FMO07835.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:07:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Spn42Da-RA | 1505 | CG9453-RA | 274..1313 | 8..1031 | 4815 | 98.4 | Plus |
| Spn42Da-RB | 1385 | CG9453-RB | 154..1193 | 8..1031 | 4815 | 98.4 | Plus |
| Spn42Da-RL | 2155 | CG9453-RL | 640..1624 | 8..985 | 4745 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:07:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 6877427..6878288 | 868..8 | 4260 | 99.9 | Minus |
| 2R | 25286936 | 2R | 6877272..6877364 | 957..867 | 365 | 97.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:07:34 has no hits.
FMO07835.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:37:37 Download gff for
FMO07835.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spn4-RD | 144..1147 | 1..998 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:39:26 Download gff for
FMO07835.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spn42Da-RB | 148..1198 | 1..1035 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:59:41 Download gff for
FMO07835.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spn42Da-RB | 148..1198 | 1..1035 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:59:41 Download gff for
FMO07835.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 6877427..6878294 | 1..868 | 99 | | Minus |
| 2R | 6877107..6877122 | 1000..1015 | 100 | <- | Minus |
| 2R | 6877221..6877362 | 869..999 | 91 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:39:26 Download gff for
FMO07835.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 2764612..2764627 | 1000..1015 | 100 | <- | Minus |
| arm_2R | 2764726..2764867 | 869..999 | 91 | <- | Minus |
| arm_2R | 2764932..2765799 | 1..868 | 99 | | Minus |
