FMO07841.5prime Sequence
1078 bp (966 high quality bases) assembled on 2009-08-11
> FMO07841.5prime
CAGTCGACATGTCGCATCGCGTTCTGGTCATTGGCAGCGGCGGTCGGGAG
CACGCGATCTGCTGGAAGTTGTCGCAATCTCCGAAGGTGGCCCAAATATA
CGCACTGCCGGGTAGCCATGGCATCCAGCTGGTGGAGAAGTGCCGGAATC
TGGATGCCAAGACCTTGGATCCTAAGGATTTCGAGGCCATTGCTAAATGG
AGCAAGGAGAACCAGATAGCCCTAGTGGTTGTGGGACCCGAAGATCCCTT
GGCTTTGGGTTTGGGCGATGTGCTGCAGAGCGCTGGAATTCCCTGCTTTG
GACCCGGCAAGCAAGGTGCCCAAATCGAGGCGGACAAGAAGTGGGCCAAG
GACTTTATGCTGCGCCATGGGATTCCCACAGCGCGTTACGAAAGTTTCAC
AGACACCGAAAAGGCCAAGGCATTCATAAGAAGCGCTCCGTATCCAGCTC
TGGTGGTGAAAGCTGCTGGATTGGCCGCCGGAAAGGGCGTGGTGGTGGCC
GCCAATGCGAAGGAGGCCTGCCAGGCGGTGGACGAGATCCTGGGAGATCT
GAAATACGGTCAGGCTGGCGCCACGCTGGTGGTGGAGGAGCTACTGGAGG
GCGAAGAGGTTTCCGTTCTGGCCTTCACCGATGGCAAAAGTGTGCGTGCC
ATGCTGCCAGCGCTGGATCACAAGCGACTGGGCAATGGCGATACTGGACC
AAACACCGGCGGCATGGGCGCCTACTGCCCTTGTCCGTTGATCAGCCAGC
CAGCACTGGAACTGGTGCAAAAGGCCGTGCTGGAGCGGGCTGTGCAGGGT
CTGATCAAGGAGAGGATCAACTACCAGGGTGTACTCTATGCGGGACTCAT
GCTGACACGCGATGGTCCCCGTGTGCTGGAGTTAACTGCGGGTTTGGAGA
TCCCGAGACCCATGTGATTCTGCCGCTGCTCGAAAGCGATCTTGTTCGTG
TGATGGAAGCTTGTTGCAGCGAAGCCTGGACAGATCCCCCTGTAATGCGC
ACTGGAGTGAATGGCGTTGTGTGGTCTGGCGATGGCTGGCTTCTCGGAAA
ACTCACAAGGGTTCACCATCTCGGGACT
FMO07841.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:59:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ade3-RC | 4718 | CG31628-RC | 194..1272 | 9..1078 | 4795 | 97 | Plus |
| ade3-RB | 1556 | CG31628-RB | 194..1272 | 9..1078 | 4795 | 97 | Plus |
| ade3-RA | 4480 | CG31628-RA | 194..1272 | 9..1078 | 4795 | 97 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:59:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 7018542..7019082 | 971..432 | 2520 | 98.2 | Minus |
| 2L | 23513712 | 2L | 7019135..7019384 | 433..184 | 1250 | 100 | Minus |
| 2L | 23513712 | 2L | 7023528..7023705 | 186..9 | 890 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:59:37 has no hits.
FMO07841.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:27:09 Download gff for
FMO07841.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ade3-RB | 236..1222 | 9..992 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:58:23 Download gff for
FMO07841.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ade3-RA | 236..1222 | 9..992 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:35:11 Download gff for
FMO07841.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ade3-RA | 194..1180 | 9..992 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:35:11 Download gff for
FMO07841.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 7018542..7019080 | 434..971 | 98 | <- | Minus |
| 2L | 7019135..7019382 | 186..433 | 100 | <- | Minus |
| 2L | 7023529..7023705 | 9..185 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:58:23 Download gff for
FMO07841.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 7018542..7019080 | 434..971 | 98 | <- | Minus |
| arm_2L | 7019135..7019382 | 186..433 | 100 | <- | Minus |
| arm_2L | 7023529..7023705 | 9..185 | 100 | | Minus |
