FMO07842.5prime Sequence
1109 bp (919 high quality bases) assembled on 2009-08-11
> FMO07842.5prime
CAGTCGACATGGAAACGGAGTCTCTGAACCGCAAGAACTCCTCGCGGAAG
AGTTCAATCGTGAATGGGAATGGAGATGCCTCTGCCAAGTTGACCAACGG
CGATGGAGATGGAGGCGGAGACGGAGGCGGAGAGGTGACTCTGAAGGCCA
AGATGAGCCTGCTCAATGGATGCACCGTCATAGTGGGCTCCATCATCGGA
TCGGGCATCTTTGTATCGCCCACGGGAGTGCTGATGTACACGGGCAGTGT
CAACCTGGCCCTCATCGTTTGGGTCATTTCCGGCCTTTTCTCGATGGTGG
GTGCCTACTGCTATGCGGAGTTGGGAACGATGATCACCAAGTCGGGTGCT
GATTACTCATACATCATGGAGACTTTCGGACCCTTCATGGCCTTCATCCG
ACTCTGGATCGAGTGCATGATCGTGCGACCCTGCTCCCAGGCCATCGTAG
CCCTCACCTTCAGTACCTACGTCCTGAAGCCCTTCTTCCCGGAGTGCACT
CCTCCGGAGGACTCGGCCCGCCTGCTAGCCGTCTGTTGCATCCTTGTGCT
AACCCTAATCAACTGCTGGGACGTAAAATGGGCGACCGCTGTGCAGGATA
TCTTTACATATGCGAAACTGCTGGCCCTGTTTATCATCATTGCCACTGGC
GTTTACCAACTTTACCTCGGCAACACGCAATACTTTACGTTTGAGAATAC
GGACACGAAAGTGACCTCCATCGCGCTGTCCTTCTACTCCGGTCTGTTTG
CCTACGACGGATGGAATTACTTGAACTTCATCATTGAGGAGCTGAAGGAT
CCCGTCAAGAATCTGCCCCGCGCCATCGCCATCAGTTGCACCCTGCTGAC
CATTGTCTATGTCATGGCGAATGTATCCTTCTACACCATCCTGTCGCAGA
TGAGTCATGGGCTCCTCGGCCATGTCGTGACCTATGCGCAGCGGGCCTTC
GGCATGCTGGCCTGTACCATCCAGTTTTTGTGGCCTTGTCTACGTTTGGA
GCAGTGAACGCTTTCTGCTGACCTCCTCCTGACTCTTCTACCCGGAGCGC
AAACGGACAAATGACGAAAATCGTAACCTGAATCAGAATCCAGATATCCC
CCCCACTCC
FMO07842.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:03:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1607-RD | 3020 | CG1607-RD | 262..1308 | 8..1048 | 4935 | 98.5 | Plus |
CG1607-RC | 2894 | CG1607-RC | 136..1182 | 8..1048 | 4935 | 98.5 | Plus |
CG1607-RB | 2956 | CG1607-RB | 136..1182 | 8..1048 | 4935 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:03:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 31387110..31387405 | 8..303 | 1465 | 99.7 | Plus |
3R | 32079331 | 3R | 31387933..31388180 | 296..543 | 1225 | 99.6 | Plus |
3R | 32079331 | 3R | 31389380..31389590 | 763..970 | 815 | 95.7 | Plus |
3R | 32079331 | 3R | 31389169..31389315 | 618..764 | 720 | 99.3 | Plus |
3R | 32079331 | 3R | 31389037..31389110 | 544..617 | 370 | 100 | Plus |
3R | 32079331 | 3R | 31389654..31389726 | 970..1041 | 285 | 95.9 | Plus |
3R | 32079331 | 3R | 27110273..27110336 | 793..730 | 185 | 85.9 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:03:35 has no hits.
FMO07842.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:27:08 Download gff for
FMO07842.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1607-RB | 128..1193 | 1..1059 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:23:12 Download gff for
FMO07842.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1607-RB | 129..1194 | 1..1059 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:58:14 Download gff for
FMO07842.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1607-RB | 129..1194 | 1..1059 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:58:14 Download gff for
FMO07842.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 31389381..31389595 | 764..974 | 95 | -> | Plus |
3R | 31389659..31389726 | 975..1041 | 95 | == | Plus |
3R | 31387934..31388180 | 297..543 | 99 | -> | Plus |
3R | 31389037..31389110 | 544..617 | 100 | -> | Plus |
3R | 31389169..31389314 | 618..763 | 99 | -> | Plus |
3R | 31387103..31387398 | 1..296 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:23:12 Download gff for
FMO07842.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 27215103..27215317 | 764..974 | 95 | -> | Plus |
arm_3R | 27215381..27215448 | 975..1041 | 95 | == | Plus |
arm_3R | 27212825..27213120 | 1..296 | 98 | -> | Plus |
arm_3R | 27213656..27213902 | 297..543 | 99 | -> | Plus |
arm_3R | 27214759..27214832 | 544..617 | 100 | -> | Plus |
arm_3R | 27214891..27215036 | 618..763 | 99 | -> | Plus |