Clone FMO07842 Report

Search the DGRC for FMO07842

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:78
Well:42
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG1607-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO07842.5prime Sequence

1109 bp (919 high quality bases) assembled on 2009-08-11

> FMO07842.5prime
CAGTCGACATGGAAACGGAGTCTCTGAACCGCAAGAACTCCTCGCGGAAG
AGTTCAATCGTGAATGGGAATGGAGATGCCTCTGCCAAGTTGACCAACGG
CGATGGAGATGGAGGCGGAGACGGAGGCGGAGAGGTGACTCTGAAGGCCA
AGATGAGCCTGCTCAATGGATGCACCGTCATAGTGGGCTCCATCATCGGA
TCGGGCATCTTTGTATCGCCCACGGGAGTGCTGATGTACACGGGCAGTGT
CAACCTGGCCCTCATCGTTTGGGTCATTTCCGGCCTTTTCTCGATGGTGG
GTGCCTACTGCTATGCGGAGTTGGGAACGATGATCACCAAGTCGGGTGCT
GATTACTCATACATCATGGAGACTTTCGGACCCTTCATGGCCTTCATCCG
ACTCTGGATCGAGTGCATGATCGTGCGACCCTGCTCCCAGGCCATCGTAG
CCCTCACCTTCAGTACCTACGTCCTGAAGCCCTTCTTCCCGGAGTGCACT
CCTCCGGAGGACTCGGCCCGCCTGCTAGCCGTCTGTTGCATCCTTGTGCT
AACCCTAATCAACTGCTGGGACGTAAAATGGGCGACCGCTGTGCAGGATA
TCTTTACATATGCGAAACTGCTGGCCCTGTTTATCATCATTGCCACTGGC
GTTTACCAACTTTACCTCGGCAACACGCAATACTTTACGTTTGAGAATAC
GGACACGAAAGTGACCTCCATCGCGCTGTCCTTCTACTCCGGTCTGTTTG
CCTACGACGGATGGAATTACTTGAACTTCATCATTGAGGAGCTGAAGGAT
CCCGTCAAGAATCTGCCCCGCGCCATCGCCATCAGTTGCACCCTGCTGAC
CATTGTCTATGTCATGGCGAATGTATCCTTCTACACCATCCTGTCGCAGA
TGAGTCATGGGCTCCTCGGCCATGTCGTGACCTATGCGCAGCGGGCCTTC
GGCATGCTGGCCTGTACCATCCAGTTTTTGTGGCCTTGTCTACGTTTGGA
GCAGTGAACGCTTTCTGCTGACCTCCTCCTGACTCTTCTACCCGGAGCGC
AAACGGACAAATGACGAAAATCGTAACCTGAATCAGAATCCAGATATCCC
CCCCACTCC

FMO07842.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:03:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG1607-RD 3020 CG1607-RD 262..1308 8..1048 4935 98.5 Plus
CG1607-RC 2894 CG1607-RC 136..1182 8..1048 4935 98.5 Plus
CG1607-RB 2956 CG1607-RB 136..1182 8..1048 4935 98.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:03:34
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 31387110..31387405 8..303 1465 99.7 Plus
3R 32079331 3R 31387933..31388180 296..543 1225 99.6 Plus
3R 32079331 3R 31389380..31389590 763..970 815 95.7 Plus
3R 32079331 3R 31389169..31389315 618..764 720 99.3 Plus
3R 32079331 3R 31389037..31389110 544..617 370 100 Plus
3R 32079331 3R 31389654..31389726 970..1041 285 95.9 Plus
3R 32079331 3R 27110273..27110336 793..730 185 85.9 Minus
Blast to na_te.dros performed on 2014-11-28 19:03:35 has no hits.

FMO07842.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:27:08 Download gff for FMO07842.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1607-RB 128..1193 1..1059 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:23:12 Download gff for FMO07842.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1607-RB 129..1194 1..1059 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:58:14 Download gff for FMO07842.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1607-RB 129..1194 1..1059 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:58:14 Download gff for FMO07842.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 31389381..31389595 764..974 95 -> Plus
3R 31389659..31389726 975..1041 95 == Plus
3R 31387934..31388180 297..543 99 -> Plus
3R 31389037..31389110 544..617 100 -> Plus
3R 31389169..31389314 618..763 99 -> Plus
3R 31387103..31387398 1..296 98 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:23:12 Download gff for FMO07842.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 27215103..27215317 764..974 95 -> Plus
arm_3R 27215381..27215448 975..1041 95 == Plus
arm_3R 27212825..27213120 1..296 98 -> Plus
arm_3R 27213656..27213902 297..543 99 -> Plus
arm_3R 27214759..27214832 544..617 100 -> Plus
arm_3R 27214891..27215036 618..763 99 -> Plus